| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is pilP1
Identifier: 153948141
GI number: 153948141
Start: 4207364
End: 4207858
Strand: Reverse
Name: pilP1
Synonym: YpsIP31758_3732
Alternate gene names: NA
Gene position: 4207858-4207364 (Counterclockwise)
Preceding gene: 153948492
Following gene: 153949834
Centisome position: 89.09
GC content: 49.49
Gene sequence:
>495_bases ATGCACAAAATTAACCCCATCTGTCTATTGTTGCCTTTGGTTCTTTGGGCCGGTTCAGTCAGCGCGGCGGGCGATCAGCC ATCAGCTAAAACGACTGATATATCAAGCATAACGGTGAGCCAACTGGAATCTATCCAGCAACGTAATATGTTGCTGGAGG CTCAGGTTCAGACCGCTCGACTTAAGCGCCAACTGCGTGAAAATGAACAGATCATTCTTCCCACTGATGGAAACCTTACA TCAACGATGCCTTTCACTACGGGGTTGGAAAATATGCCCGAAACGGGTCCAGTGGCCTCGGGTTCCAAAAAGGCGACACT ACAACTTGAAGAAATTTATGGCCGAGGTCACCCATTACGGGCACGTTTCCGTCTGGTCACAGGAGGTGTCGTTGAGGTCA CTCAAGGTGATATTTTGCCTGGCAGTTCTCTCAAGATAACGGCGATTACAGCGTCGGTGGTGAAACTGAGTGACGGCACT GTGATGTCATTCTGA
Upstream 100 bases:
>100_bases GTGTTAGCCAGCATAGATGATATCGGTCTGCGTCTGACAAGCATCGCGTTTACGCTCAACCCGCAGAGTCAATTTGAATA CACTATCAAGGGGAGCCTGT
Downstream 100 bases:
>100_bases GGCGAAAAAATGATTATTGATAAGGATATCAGGGAGTTTGTCTTTGTTGATCATCTGCCCTGTGGGCAAGTCGTGCTGGT TATTGATAACAATCGACGCA
Product: type IV pilus biogenesis protein PilP
Products: NA
Alternate protein names: Pilus Assembly Protein; Type IV Pilus Protein
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MHKINPICLLLPLVLWAGSVSAAGDQPSAKTTDISSITVSQLESIQQRNMLLEAQVQTARLKRQLRENEQIILPTDGNLT STMPFTTGLENMPETGPVASGSKKATLQLEEIYGRGHPLRARFRLVTGGVVEVTQGDILPGSSLKITAITASVVKLSDGT VMSF
Sequences:
>Translated_164_residues MHKINPICLLLPLVLWAGSVSAAGDQPSAKTTDISSITVSQLESIQQRNMLLEAQVQTARLKRQLRENEQIILPTDGNLT STMPFTTGLENMPETGPVASGSKKATLQLEEIYGRGHPLRARFRLVTGGVVEVTQGDILPGSSLKITAITASVVKLSDGT VMSF >Mature_164_residues MHKINPICLLLPLVLWAGSVSAAGDQPSAKTTDISSITVSQLESIQQRNMLLEAQVQTARLKRQLRENEQIILPTDGNLT STMPFTTGLENMPETGPVASGSKKATLQLEEIYGRGHPLRARFRLVTGGVVEVTQGDILPGSSLKITAITASVVKLSDGT VMSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17598; Mature: 17598
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKINPICLLLPLVLWAGSVSAAGDQPSAKTTDISSITVSQLESIQQRNMLLEAQVQTAR CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH LKRQLRENEQIILPTDGNLTSTMPFTTGLENMPETGPVASGSKKATLQLEEIYGRGHPLR HHHHHHCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCE ARFRLVTGGVVEVTQGDILPGSSLKITAITASVVKLSDGTVMSF EEEEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEECCCEEECC >Mature Secondary Structure MHKINPICLLLPLVLWAGSVSAAGDQPSAKTTDISSITVSQLESIQQRNMLLEAQVQTAR CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH LKRQLRENEQIILPTDGNLTSTMPFTTGLENMPETGPVASGSKKATLQLEEIYGRGHPLR HHHHHHCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCE ARFRLVTGGVVEVTQGDILPGSSLKITAITASVVKLSDGTVMSF EEEEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA