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The map label for this gene is lpfC [H]

Identifier: 153947879

GI number: 153947879

Start: 1931050

End: 1933497

Strand: Reverse

Name: lpfC [H]

Synonym: YpsIP31758_1663

Alternate gene names: 153947879

Gene position: 1933497-1931050 (Counterclockwise)

Preceding gene: 153949830

Following gene: 153949234

Centisome position: 40.94

GC content: 46.2

Gene sequence:

>2448_bases
ATGATTATCAGATTCCGGCTACCGCCATTATCGGTACTGATATATGGCTCAATATTGTTACCGTCACTGATACCCTTGAC
TATTTTAGGAGGGAGCCTCCCTCCGCCCTCGACATCAACAACGATGCCTGATACTACGTTATATCTTGAACTCGTGGTCA
ATGACCGTAACTTTGGGAATGCTGTACCTATTAGTTACCGCAACAACCGTTATTACCTTTCTCAATCACAGCTAAGAGCG
ATTGGGCTTCCTATATCAGAGCCACTGGCACCCGAGATTGCCATTGATAATATGGCGGGCGTGAACGTTAAATATGATGG
AGAGAACCAACGCCTATTAATCAATGTTCCCAGCGAGTGGCTACCAAAGCAACAAATCGAGGTTACCGAACAAGATGATT
TCAATCTTGCGCAAAGTAGTTTGGGGGCTTTATTCAATTACGATATCTATGCCACACAAGGTTACCCGTACTCATCTTTA
ACTCATTTTTCAGCATGGACAGAACAGCGCATTTTTGATCGTTTTGGCTTGCTCAGTAATACCGGCGTTTATCGCACCCA
CTTCCCAAGTAATAACAACACAGATGATGCGAAAGGCTATATTCGTTTTGATACCCAGTGGCAGAAGAATGACGAAGAAC
ATCTGCTGCGTTATAGCGCAGGTGACCTCATTACCGGTGCTTTGCCATGGTGCAGTGCGATACGTCTTGGCGGCATTCAG
ATAGCACGGCATTTTGCTATTCGGCCCGATCTCATAACCTACCCATTACCACAATTTTCTGGTCAGGCCGCAGTCCCCAG
CACCGTTGATCTCTACATTGATAACTTCAGGACACAATCGGCCAATATCAACCCAGGCCCTTTTGTCATCAATAATGCAC
CGCGAATCAATGGTGCAGGCCAAGCGACTATCGTCACAACCGATGCCCTTGGCAGGCAAATCAGCACATCTGTACCCTTT
TACGTTGCCAGTACACTGCTAAAACCCGGAGTGTGGGATTTCAGTCTCTCGGGGGGTGCCCTACGTCGTAATTATGCGAT
TCGCTCAGCAGATTACGGTGAAATGGTTGCCAGTGGTGTCGTTCGTTACGGCACAACACCTTGGTTGACACTGGAGGGCC
GGGGAGACATCGCCAAAGAAATGCATGTAATTGGGGGTGGCGTTAATTTTCGCATGGGGTTATTGGGTGTCCTAAATAGT
GCATACAGTATAAGCAACACATCGAACGGCGCTTTTAACAATGTGGCTGAACCGCTAAATACCAATAATGCCACGCCGAA
TAGATTACCGTCCCCAGCAGCGTCACGCCGTGGACGTGGCAACCAGCGTTCATTAGGCTATAGCTACAGTAATGCATTCT
TTAATTTAAATGCTCAACATATTATCTCTAGTGATGAATACAGTGACCTTGCCAATTATAAAACGCCTTCTCTCTTAAGC
CGACGCATGACTCAACTCACGGGAAGTCTCAGCCTCGGTAGTTACGGCACCGTGGGATCGGGTTACTTTGATGTCAGGGA
TGCTCTTGGCGAACAAACCCGGCTCATTAATATCAGCTACAGCACCTCACTGTTACGCAATAGCAACTTTTATAGCGCAC
TAAACCGTGAGCTGGGCCGTAAAGGTTACAATGTACAACTGGTCTGGAGCATTCCGTTAGGCCCGCGGGGATCAAGCAGC
ATCAGTGCAACCCGCACGAATGATAACCAATGGATTCAACAACTGAATTATAGCCGTTCAGCGCCCTCGAATGGGGGATT
GGGCTGGAACCTCGCTTATGCCAACAGCACGAATAACAATAATCAATACCAACAGGCAGACATTGTTTGGCGTACTTCAA
TGATGGAGAGTCGCATGGGCCTATATGGTAACAGTAATAACTACAACTATTGGGGGGGATTAACCGGTTCATTAGTGGTG
ATGAATAGGAGTGTCTATGCCAGCAATATGATTAACGATGCTTTTGCTTTGGTATCGACCAATGGTTTTAGTAATATTCC
GGTTAGTTACGAAAATCAACTTATTGGCACAACTAATGCCAAGGGTTATTTGCTGATCCCGACAGTCGCCTCATATTATC
AGGCAAAATTCCAGATTGACCCAATGAATTTACCGGCAGATGTCATGCTACCCAATGTTGAACGGCGGTTAGCCATTGGT
GAACGCAGTGGCTATTTAATTAATTTCCCCATTAAGCGAATTTCCGCAGTGAATATTAGAATTACAGACGCATCAGGCCA
AGACTTACCGAAAGGCAGTGCAATATATACTACCGGTAACATCCCCATAAGTTATGTCGGTTGGGATGGCATGGTATATA
TCGAGCAAGTGGCACAATTAAATAACCTTAGGATTATACGTGCCGATAATGGCACACAGTGCTACAGCCAGTTCAAACTA
AAGACGACGGAAGGTATACAGGATGCTGGCACCACAGTATGCCGATAG

Upstream 100 bases:

>100_bases
CACCAAACCAGTAACTATTCCATACCAGTAACTAGCCCATATCAGTAATTGAGAGACATAAAAACAAATGAGATTTTACA
CAATGAACTGAGGATCGAGG

Downstream 100 bases:

>100_bases
TCGCTACATGATGCTCTCAATATACCCAAAATAATTCGAGTTGCAGGAAGGCAACAACAGAGTAGGTCCCCAGGAACTTA
TTTATTTTAAGGGCAACGAC

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 815; Mature: 815

Protein sequence:

>815_residues
MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGNAVPISYRNNRYYLSQSQLRA
IGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEWLPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSL
THFSAWTEQRIFDRFGLLSNTGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWCSAIRLGGIQ
IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAGQATIVTTDALGRQISTSVPF
YVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGVVRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNS
AYSISNTSNGAFNNVAEPLNTNNATPNRLPSPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS
RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGRKGYNVQLVWSIPLGPRGSSS
ISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNNNQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVV
MNRSVYASNMINDAFALVSTNGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG
ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRADNGTQCYSQFKL
KTTEGIQDAGTTVCR

Sequences:

>Translated_815_residues
MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGNAVPISYRNNRYYLSQSQLRA
IGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEWLPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSL
THFSAWTEQRIFDRFGLLSNTGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWCSAIRLGGIQ
IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAGQATIVTTDALGRQISTSVPF
YVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGVVRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNS
AYSISNTSNGAFNNVAEPLNTNNATPNRLPSPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS
RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGRKGYNVQLVWSIPLGPRGSSS
ISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNNNQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVV
MNRSVYASNMINDAFALVSTNGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG
ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRADNGTQCYSQFKL
KTTEGIQDAGTTVCR
>Mature_815_residues
MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGNAVPISYRNNRYYLSQSQLRA
IGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEWLPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSL
THFSAWTEQRIFDRFGLLSNTGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWCSAIRLGGIQ
IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAGQATIVTTDALGRQISTSVPF
YVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGVVRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNS
AYSISNTSNGAFNNVAEPLNTNNATPNRLPSPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS
RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGRKGYNVQLVWSIPLGPRGSSS
ISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNNNQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVV
MNRSVYASNMINDAFALVSTNGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG
ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRADNGTQCYSQFKL
KTTEGIQDAGTTVCR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1788427, Length=587, Percent_Identity=23.3390119250426, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 89818; Mature: 89818

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGN
CEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
AVPISYRNNRYYLSQSQLRAIGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEW
EEEEEEECCEEEECCCCEEEECCCCCCCCCCCEEECCCCCCEEEECCCCCEEEEECCHHH
LPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSLTHFSAWTEQRIFDRFGLLSN
CCCCCEEEECCCCCHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
TGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWCSAIRLGGIQ
CCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHEECCCCEEECCCHHHHHHHHCCEE
IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAG
EEHEEECCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCC
QATIVTTDALGRQISTSVPFYVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGV
CEEEEEEHHHCCHHCCCCCHHHHHHHHCCCCEEEECCCCCEEECEEECCCCHHHHHHHHH
VRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNSAYSISNTSNGAFNNVAEPLN
HHCCCCCEEEEECCCCCCHHHEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHCCCCCC
TNNATPNRLPSPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS
CCCCCCCCCCCCHHHHCCCCCCCCCCEEECCEEEECCHHHEECCCCHHHHHCCCCHHHHH
RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGR
HHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEHHHHHHCCCHHHHHHHHHCC
KGYNVQLVWSIPLGPRGSSSISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNN
CCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC
NQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVVMNRSVYASNMINDAFALVST
CCEEEEHEEEHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHCCEEEEEEC
NGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG
CCCCCCCCCCCCEEEECCCCCCEEEECCHHCCEEEEEEECCCCCCHHHCCCCCHHHEEEC
ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQL
CCCCEEEECCHHHEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCEEHHHHHHHH
NNLRIIRADNGTQCYSQFKLKTTEGIQDAGTTVCR
CCEEEEECCCCCEEEHEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGN
CEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
AVPISYRNNRYYLSQSQLRAIGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEW
EEEEEEECCEEEECCCCEEEECCCCCCCCCCCEEECCCCCCEEEECCCCCEEEEECCHHH
LPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSLTHFSAWTEQRIFDRFGLLSN
CCCCCEEEECCCCCHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
TGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWCSAIRLGGIQ
CCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHEECCCCEEECCCHHHHHHHHCCEE
IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAG
EEHEEECCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCC
QATIVTTDALGRQISTSVPFYVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGV
CEEEEEEHHHCCHHCCCCCHHHHHHHHCCCCEEEECCCCCEEECEEECCCCHHHHHHHHH
VRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNSAYSISNTSNGAFNNVAEPLN
HHCCCCCEEEEECCCCCCHHHEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHCCCCCC
TNNATPNRLPSPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS
CCCCCCCCCCCCHHHHCCCCCCCCCCEEECCEEEECCHHHEECCCCHHHHHCCCCHHHHH
RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGR
HHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEHHHHHHCCCHHHHHHHHHCC
KGYNVQLVWSIPLGPRGSSSISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNN
CCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC
NQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVVMNRSVYASNMINDAFALVST
CCEEEEHEEEHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHCCEEEEEEC
NGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG
CCCCCCCCCCCCEEEECCCCCCEEEECCHHCCEEEEEEECCCCCCHHHCCCCCHHHEEEC
ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQL
CCCCEEEECCHHHEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCEEHHHHHHHH
NNLRIIRADNGTQCYSQFKLKTTEGIQDAGTTVCR
CCEEEEECCCCCEEEHEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]