| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
Click here to switch to the map view.
The map label for this gene is chiD [H]
Identifier: 153947851
GI number: 153947851
Start: 721297
End: 722712
Strand: Reverse
Name: chiD [H]
Synonym: YpsIP31758_0611
Alternate gene names: 153947851
Gene position: 722712-721297 (Counterclockwise)
Preceding gene: 153947370
Following gene: 153950069
Centisome position: 15.3
GC content: 41.95
Gene sequence:
>1416_bases ATGTCCAAAAAAAATTCAAAAAAATCACCGGTCCAAAGAGTCGATATTAAAGATAAAAAAATATTTATGGGGTTTTGGCA CAATTGGCCATCCTACCCTAGAAATGGCTATAAATATGGGCAGTCTACCAATATACCGTTGGCCGATATTCCTAAAGAGT TCAATGTTATTGCCGTCGCCTTTATGAAGGGAAGCGGTATCCCAACATTTAGACCATACATCGGATCGGATGAGCAGTTC CGCACACAAGTGGATAAACTGCATAGTGAGGGCCGCTCAGTACTGATCTCCTTAGGGGGCGCTGATGCAGAGATCTCATT AACATCCCAAGACGAGGCGGCCTTTGTCGCAGAGATTAAACGATTAGTTGATGTCTATGGTTTTGATGGTTTAGATATCG ATTTAGAGCAGGCGGCAATTAGTTATAAAGAAAACTCGACGGTGATCCCTCGGGCATTAAAAACAGTAAAAGACTATTAC GCTAATTTAGGCCAACACTTTATTATTAGTATGGCACCCGAATTCCCTCACTTAAGAATTAATGAGGCATATGTTCCTTA TATTAAGGCGTTAGAGGGATATTATGACTTTATTGCACCACAATATTATAATCAGTTGGGTGATGGCGTCCACACGGATA GCGGAGAGTTTATCGCTCAAAGTAATAATGAGCGAAAAGAAGATTTTCTTTACTACTTAACTAAACATTTAGTTTCTAGT TCTCAAACATTTATTAATATCCCAGCAAATAAATTTGTTATGGGGTTACCGGCAAATAATGACGCGGCAGATAATGGCTA TGTCATTGATAAAAAAGATGTGCATAACGCCTTCGCCAGACTGGATGCCGCAGGTTTATCCATTCGAGGCCTGATGACCT GGTCAATCGACTGGGACAACGGTAAAGATGTCCAAGGGAAAAGTTATAATTGGGAGTTTAAAACACGCTACGCCTCCCTG GCTAATAATGATGATGGCAGCAATAATAATAATCTCCCATTGGCCCCCTACAACCTTATTCAAACCTCAAAGGCGGCGAA CAGCCTTGAATTATCTTGGCAGCATACGCTTAATGTCAATTCTATCAGCTATTACTCCATTTTCCGTGATGGCAATAAAG TAGGGACCTCGGCGAATACCACCTTTACCGATACCGGGCTAGAACCCAATAAACAATATATCTATAAAGTGAGCGCTACC GACTCAAAAGGGCAAATTTCTGATTTCAGTACGGTGGTAACGGCAACGACGTTAACGACCAGTCTTTCAGTCTGGGAGAA AGACCAATGGTACAACGATAATGATTCGGTACGGCATAACGCAGAAAACTATATTTGCGTCATGCAACACACCTCAAACC CATTCTGGTCACCGGATCAAGCCACCACATTATGGCAGCTCGCCGTACAGCGCTAA
Upstream 100 bases:
>100_bases CATGCTCTGAGGTTTACGTTCAAAAACTGGCGAGGGCCATCATGGTAAGGATTAAACGACATACACTCAACGCATTACTG ATGATAATGAGGAAATAATT
Downstream 100 bases:
>100_bases ATTTAGCGGGTTCGGTACCCTAAAGAATTCCACTGAAATAATTAATATTATTAAGGAATATATGATGAAATACAGAACGC CCAATATTATCAGCCGCAAC
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MSKKNSKKSPVQRVDIKDKKIFMGFWHNWPSYPRNGYKYGQSTNIPLADIPKEFNVIAVAFMKGSGIPTFRPYIGSDEQF RTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIKRLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYY ANLGQHFIISMAPEFPHLRINEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSNNERKEDFLYYLTKHLVSS SQTFINIPANKFVMGLPANNDAADNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDNGKDVQGKSYNWEFKTRYASL ANNDDGSNNNNLPLAPYNLIQTSKAANSLELSWQHTLNVNSISYYSIFRDGNKVGTSANTTFTDTGLEPNKQYIYKVSAT DSKGQISDFSTVVTATTLTTSLSVWEKDQWYNDNDSVRHNAENYICVMQHTSNPFWSPDQATTLWQLAVQR
Sequences:
>Translated_471_residues MSKKNSKKSPVQRVDIKDKKIFMGFWHNWPSYPRNGYKYGQSTNIPLADIPKEFNVIAVAFMKGSGIPTFRPYIGSDEQF RTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIKRLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYY ANLGQHFIISMAPEFPHLRINEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSNNERKEDFLYYLTKHLVSS SQTFINIPANKFVMGLPANNDAADNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDNGKDVQGKSYNWEFKTRYASL ANNDDGSNNNNLPLAPYNLIQTSKAANSLELSWQHTLNVNSISYYSIFRDGNKVGTSANTTFTDTGLEPNKQYIYKVSAT DSKGQISDFSTVVTATTLTTSLSVWEKDQWYNDNDSVRHNAENYICVMQHTSNPFWSPDQATTLWQLAVQR >Mature_470_residues SKKNSKKSPVQRVDIKDKKIFMGFWHNWPSYPRNGYKYGQSTNIPLADIPKEFNVIAVAFMKGSGIPTFRPYIGSDEQFR TQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIKRLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYYA NLGQHFIISMAPEFPHLRINEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSNNERKEDFLYYLTKHLVSSS QTFINIPANKFVMGLPANNDAADNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDNGKDVQGKSYNWEFKTRYASLA NNDDGSNNNNLPLAPYNLIQTSKAANSLELSWQHTLNVNSISYYSIFRDGNKVGTSANTTFTDTGLEPNKQYIYKVSATD SKGQISDFSTVVTATTLTTSLSVWEKDQWYNDNDSVRHNAENYICVMQHTSNPFWSPDQATTLWQLAVQR
Specific function: Unknown
COG id: COG3469
COG function: function code G; Chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 53112; Mature: 52980
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS50853 FN3 ; PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKNSKKSPVQRVDIKDKKIFMGFWHNWPSYPRNGYKYGQSTNIPLADIPKEFNVIAVA CCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE FMKGSGIPTFRPYIGSDEQFRTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIK EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHH RLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYYANLGQHFIISMAPEFPHLRI HHHHHHCCCCCCEEHHHHHEEECCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE NEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSNNERKEDFLYYLTKHLVSS CCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC SQTFINIPANKFVMGLPANNDAADNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDN CCEEEECCCCCEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHCCCEEEEEEEEEEECCC GKDVQGKSYNWEFKTRYASLANNDDGSNNNNLPLAPYNLIQTSKAANSLELSWQHTLNVN CCCCCCCCCCEEEHHHEEHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECC SISYYSIFRDGNKVGTSANTTFTDTGLEPNKQYIYKVSATDSKGQISDFSTVVTATTLTT CEEEEEEEECCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCHHHHEEEEEHHHE SLSVWEKDQWYNDNDSVRHNAENYICVMQHTSNPFWSPDQATTLWQLAVQR EHEECCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCHHHHHHHEECC >Mature Secondary Structure SKKNSKKSPVQRVDIKDKKIFMGFWHNWPSYPRNGYKYGQSTNIPLADIPKEFNVIAVA CCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE FMKGSGIPTFRPYIGSDEQFRTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIK EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHH RLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYYANLGQHFIISMAPEFPHLRI HHHHHHCCCCCCEEHHHHHEEECCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE NEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSNNERKEDFLYYLTKHLVSS CCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC SQTFINIPANKFVMGLPANNDAADNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDN CCEEEECCCCCEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHCCCEEEEEEEEEEECCC GKDVQGKSYNWEFKTRYASLANNDDGSNNNNLPLAPYNLIQTSKAANSLELSWQHTLNVN CCCCCCCCCCEEEHHHEEHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECC SISYYSIFRDGNKVGTSANTTFTDTGLEPNKQYIYKVSATDSKGQISDFSTVVTATTLTT CEEEEEEEECCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCHHHHEEEEEHHHE SLSVWEKDQWYNDNDSVRHNAENYICVMQHTSNPFWSPDQATTLWQLAVQR EHEECCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]