Click here to switch to the map view.

The map label for this gene is ybgL [C]

Identifier: 153947766

GI number: 153947766

Start: 1319285

End: 1320022

Strand: Direct

Name: ybgL [C]

Synonym: YpsIP31758_1117

Alternate gene names: 153947766

Gene position: 1319285-1320022 (Clockwise)

Preceding gene: 153948195

Following gene: 153947029

Centisome position: 27.93

GC content: 53.52

Gene sequence:

>738_bases
GTGAAAATTGATTTAAATGCTGATTTGGGTGAGGGCTGCGCCAATGATCAGGCGCTGCTGCAATTGGTCAGTTCGGCCAA
CATAGCCTGCGGTTTTCATGCAGGTGATGCTCAAACTATGCGTCAATCGGTACGCTGGGCGTTGGAGTATGGTGTGGCTA
TTGGTGCACATCCGAGCTTCCCGGATCGGGAAAACTTTGGTCGCACTGCTATGCAGCTACCACCTGAGACCGTCTATGCT
CAAGTGGTTTATCAATTGGGCGCGCTTGCCGCCATCGTGCAGGTTGAAGGGGGGGTTATGCAGCACGTAAAACCCCATGG
CATGTTGTATAACCAAGCGGCGGTCGATCCGTTATTGGCGGATGCCATTGCTCAGGCGGTTAAGGCTGTGGATCCGTCAT
TACGTCTGGTCGGGTTAGCCGGGAGTGAGTTGATCCGCGCCGGTACCCGTGTGGGGTTAGTCACCCGGCAGGAAGTGTTT
GCTGATCGCCACTATCAACCCGATGGCACGTTAGTTCCTCGCAGTCAGCCAGATGCTCTAATAGAAAGTGACGAGTTAGC
GCTGTCACAAACTCTGGCTATGGTGCAACAGCATCAGGTTCAGGCCTGCGATGGCAGTTGGGTACAGGTACAAGCTGATA
CGGTATGTGTTCATGGCGATGGCGTACAGGCATTAGCGTTTGCGCGTTGTTTACGAGACCGTTTTCAGCAGGAAGGCATC
AGCGTGATAGCGCAATAA

Upstream 100 bases:

>100_bases
GTACTGTGGAAGAAGCACTACGCGCCAAAAGAGAGCAACAGCATTTCCTACAGCAAATTGAATGGGGTTTAGAGAAGGGT
TTTGTTACCCCGGAGGCCCA

Downstream 100 bases:

>100_bases
CCAGCGCCTACCTCGGGCAGAATATATTTATCACTTAAATACGTTTTACATTATTGAAATAGACTTCAGGGCGGGAGAAT
TCTCTTGGAACAAACGGTAA

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKIDLNADLGEGCANDQALLQLVSSANIACGFHAGDAQTMRQSVRWALEYGVAIGAHPSFPDRENFGRTAMQLPPETVYA
QVVYQLGALAAIVQVEGGVMQHVKPHGMLYNQAAVDPLLADAIAQAVKAVDPSLRLVGLAGSELIRAGTRVGLVTRQEVF
ADRHYQPDGTLVPRSQPDALIESDELALSQTLAMVQQHQVQACDGSWVQVQADTVCVHGDGVQALAFARCLRDRFQQEGI
SVIAQ

Sequences:

>Translated_245_residues
MKIDLNADLGEGCANDQALLQLVSSANIACGFHAGDAQTMRQSVRWALEYGVAIGAHPSFPDRENFGRTAMQLPPETVYA
QVVYQLGALAAIVQVEGGVMQHVKPHGMLYNQAAVDPLLADAIAQAVKAVDPSLRLVGLAGSELIRAGTRVGLVTRQEVF
ADRHYQPDGTLVPRSQPDALIESDELALSQTLAMVQQHQVQACDGSWVQVQADTVCVHGDGVQALAFARCLRDRFQQEGI
SVIAQ
>Mature_245_residues
MKIDLNADLGEGCANDQALLQLVSSANIACGFHAGDAQTMRQSVRWALEYGVAIGAHPSFPDRENFGRTAMQLPPETVYA
QVVYQLGALAAIVQVEGGVMQHVKPHGMLYNQAAVDPLLADAIAQAVKAVDPSLRLVGLAGSELIRAGTRVGLVTRQEVF
ADRHYQPDGTLVPRSQPDALIESDELALSQTLAMVQQHQVQACDGSWVQVQADTVCVHGDGVQALAFARCLRDRFQQEGI
SVIAQ

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=244, Percent_Identity=71.7213114754098, Blast_Score=353, Evalue=5e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1117_YERP3 (A7FFS0)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001400098.1
- ProteinModelPortal:   A7FFS0
- SMR:   A7FFS0
- STRING:   A7FFS0
- GeneID:   5386495
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_1117
- eggNOG:   COG1540
- HOGENOM:   HBG482818
- OMA:   QTICLHG
- ProtClustDB:   PRK05406
- BioCyc:   YPSE349747:YPSIP31758_1117-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 26281; Mature: 26281

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDLNADLGEGCANDQALLQLVSSANIACGFHAGDAQTMRQSVRWALEYGVAIGAHPSF
CEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCEEECCCCCC
PDRENFGRTAMQLPPETVYAQVVYQLGALAAIVQVEGGVMQHVKPHGMLYNQAAVDPLLA
CCCHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEECHHHHHHHHH
DAIAQAVKAVDPSLRLVGLAGSELIRAGTRVGLVTRQEVFADRHYQPDGTLVPRSQPDAL
HHHHHHHHHCCCCEEEEECCCHHHHHCCCHHCEEHHHHHHHCCCCCCCCCCCCCCCCCCH
IESDELALSQTLAMVQQHQVQACDGSWVQVQADTVCVHGDGVQALAFARCLRDRFQQEGI
HCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHH
SVIAQ
HHHCC
>Mature Secondary Structure
MKIDLNADLGEGCANDQALLQLVSSANIACGFHAGDAQTMRQSVRWALEYGVAIGAHPSF
CEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCEEECCCCCC
PDRENFGRTAMQLPPETVYAQVVYQLGALAAIVQVEGGVMQHVKPHGMLYNQAAVDPLLA
CCCHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEECHHHHHHHHH
DAIAQAVKAVDPSLRLVGLAGSELIRAGTRVGLVTRQEVFADRHYQPDGTLVPRSQPDAL
HHHHHHHHHCCCCEEEEECCCHHHHHCCCHHCEEHHHHHHHCCCCCCCCCCCCCCCCCCH
IESDELALSQTLAMVQQHQVQACDGSWVQVQADTVCVHGDGVQALAFARCLRDRFQQEGI
HCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHH
SVIAQ
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA