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The map label for this gene is ynfD [H]

Identifier: 153947685

GI number: 153947685

Start: 2162055

End: 2162300

Strand: Direct

Name: ynfD [H]

Synonym: YpsIP31758_1866

Alternate gene names: 153947685

Gene position: 2162055-2162300 (Clockwise)

Preceding gene: 153947867

Following gene: 153950578

Centisome position: 45.77

GC content: 41.87

Gene sequence:

>246_bases
ATGAAAAAAACACTTATTATTAGTACGTTATTATTCTCTCTGGCCCCTTTAGCTGCACTGGCATCTTGCGAAAGTGTAAA
GGCAGAAATCGCACAAAAGATTATTAGCAATGGCGTGCCGGAATCCGGTTTTAAGCTGGAAATTGTTCCTAACGATCAGG
TTCAACAAGCCGGTGGTCAAGTGGTTGGGCATTGTGAGAATGATTCACAGAAAATTGTTTATACCCGCATCACCGATAGC
GAGTAA

Upstream 100 bases:

>100_bases
GGTTTACTTGAAGTTCAGTGAACCTTGGCTATTATTTAAAAACTATTTAGGAAAAAATAGAATAGATCAGGCGAACTGTT
CACCCCCATAAGGATTTATG

Downstream 100 bases:

>100_bases
CCTATTTCCCTCCCTGCTAAGGCGTAGCATCGTGGTACGCCTTTTATATTGAACAATATTTACTGGCCATTCATTTGCTA
GCAAGTAACAATGTCCTTAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MKKTLIISTLLFSLAPLAALASCESVKAEIAQKIISNGVPESGFKLEIVPNDQVQQAGGQVVGHCENDSQKIVYTRITDS
E

Sequences:

>Translated_81_residues
MKKTLIISTLLFSLAPLAALASCESVKAEIAQKIISNGVPESGFKLEIVPNDQVQQAGGQVVGHCENDSQKIVYTRITDS
E
>Mature_81_residues
MKKTLIISTLLFSLAPLAALASCESVKAEIAQKIISNGVPESGFKLEIVPNDQVQQAGGQVVGHCENDSQKIVYTRITDS
E

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081940, Length=58, Percent_Identity=63.7931034482759, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010595
- ProDom:   PD336997 [H]

Pfam domain/function: PF06649 DUF1161 [H]

EC number: NA

Molecular weight: Translated: 8673; Mature: 8673

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLIISTLLFSLAPLAALASCESVKAEIAQKIISNGVPESGFKLEIVPNDQVQQAGGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCC
VVGHCENDSQKIVYTRITDSE
EEEECCCCCCEEEEEEECCCC
>Mature Secondary Structure
MKKTLIISTLLFSLAPLAALASCESVKAEIAQKIISNGVPESGFKLEIVPNDQVQQAGGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCC
VVGHCENDSQKIVYTRITDSE
EEEECCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784 [H]