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The map label for this gene is lrhA [H]

Identifier: 153947657

GI number: 153947657

Start: 1691650

End: 1692579

Strand: Direct

Name: lrhA [H]

Synonym: YpsIP31758_1452

Alternate gene names: 153947657

Gene position: 1691650-1692579 (Clockwise)

Preceding gene: 153950407

Following gene: 153948805

Centisome position: 35.81

GC content: 46.77

Gene sequence:

>930_bases
ATGACAAATGCAAATCGTCCGATAATTAATCTCGACCTCGATCTGCTTAGAACCTTTGTAGCTGTTGCTGACTTAAATAC
TTTTGCTGCTGCTGCTGCGGTCTGCCGAACTCAGTCAGCAGTTAGCCAACAAATGCAACGGTTAGAACAGTTAGTCGGTA
AGGAGTTATTTGCCCGCCACGGGCGTAACAAATTACTCACTGAACATGGTCTCCAGCTACTTGGCTATGCCAGAAAAATC
TTACGTTTTAATGATGAGGCTTGTACATCACTCATGTACAGCAATATGGAAGGGTCACTTATTATCGGCGCATCTGATGA
TACTGCCGATACGTTACTGCCTTTCTTGCTGAACCGAGTGGCAACACTATACCCTCGGCTGGCGATAGATGTACGGGTAA
AGCGCAGCCCATTTATCGCTGATATGTTGAGCTCTGGTGAGGTGGATTTGGCTATCACAACCGCTAAGGTTGATAGCCAT
CCCCATGTCATCTTGAGAACATCGCCCACGCTTTGGTATTGTTCGGTGGATTATCAGTTCCAGCCCGGAGAGCCAGTACC
TTTGGTGGTAATGGATGAGCCCAGTCTGTACCGAGAGATGGCTATTGAGCACTTGACTCAGGCGGGTGTTCCATGGCGTA
TTGCCTACGTGGCCTCTTCACTTTCTGCCATTCGAGCGGCAGTAAGAGCAGGGCTTGGGGTGACCGCCAGACCTATAGAG
ATGATGAGCCCAGATTTAAGAGTGTTGGGCGAAACTGAAGGGTTGCCTGGTTTACCTGAAACACGGTATGTCTTATGTAA
AGACAAACAGTGTGACAATGAACTGGCACTTGCTATTTTCAGTGCCTTACAAAACAGTTATCAGCACACCATGTCGTCAG
AATCTTCATTAATATTGGATTCCGATTATTTGACAGGTGATGAAGATTAA

Upstream 100 bases:

>100_bases
GGGTACTGTCATACTTAGCGTTGTCCTTTATTGATAACGCTGATACTTAAAACACCAGGGTAGTTTGTAATTAGAATTCA
AAAAAAGTGAAGAATACACT

Downstream 100 bases:

>100_bases
GTAATCTGTTTTTAATTCATCATCACAAGCCCCTGTATTTTAAGGGGCTTTTTTTTATTTATTTTAGTAAATCCTCTTTT
TTTTCATTTCAGCTTAATTT

Product: LrhA family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTNANRPIINLDLDLLRTFVAVADLNTFAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGLQLLGYARKI
LRFNDEACTSLMYSNMEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKVDSH
PHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIE
MMSPDLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTMSSESSLILDSDYLTGDED

Sequences:

>Translated_309_residues
MTNANRPIINLDLDLLRTFVAVADLNTFAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGLQLLGYARKI
LRFNDEACTSLMYSNMEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKVDSH
PHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIE
MMSPDLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTMSSESSLILDSDYLTGDED
>Mature_308_residues
TNANRPIINLDLDLLRTFVAVADLNTFAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGLQLLGYARKIL
RFNDEACTSLMYSNMEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKVDSHP
HVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIEM
MSPDLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTMSSESSLILDSDYLTGDED

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=310, Percent_Identity=66.7741935483871, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI1790399, Length=243, Percent_Identity=27.1604938271605, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994962, Length=148, Percent_Identity=31.0810810810811, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=179, Percent_Identity=31.8435754189944, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=25.4098360655738, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34106; Mature: 33974

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNANRPIINLDLDLLRTFVAVADLNTFAAAAAVCRTQSAVSQQMQRLEQLVGKELFARH
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRNKLLTEHGLQLLGYARKILRFNDEACTSLMYSNMEGSLIIGASDDTADTLLPFLLNRV
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
ATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKVDSHPHVILRTSPTLWYCSVDYQF
HHHCCCEEEEEEECCCCHHHHHHCCCCEEEEEEEEEECCCCEEEEEECCCEEEEEEEEEE
QPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIE
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHH
MMSPDLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTMSSESSLILD
HCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
SDYLTGDED
CCCCCCCCC
>Mature Secondary Structure 
TNANRPIINLDLDLLRTFVAVADLNTFAAAAAVCRTQSAVSQQMQRLEQLVGKELFARH
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRNKLLTEHGLQLLGYARKILRFNDEACTSLMYSNMEGSLIIGASDDTADTLLPFLLNRV
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
ATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKVDSHPHVILRTSPTLWYCSVDYQF
HHHCCCEEEEEEECCCCHHHHHHCCCCEEEEEEEEEECCCCEEEEEECCCEEEEEEEEEE
QPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIE
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHH
MMSPDLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTMSSESSLILD
HCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
SDYLTGDED
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]