| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153947402
Identifier: 153947402
GI number: 153947402
Start: 4668478
End: 4669122
Strand: Reverse
Name: 153947402
Synonym: YpsIP31758_4136
Alternate gene names: NA
Gene position: 4669122-4668478 (Counterclockwise)
Preceding gene: 153950654
Following gene: 153949369
Centisome position: 98.85
GC content: 53.8
Gene sequence:
>645_bases ATGAATATTGATCATGGGGCCCGCCAGCCACAATCAGTCGGTGAACGGCTACTGCTGCTGCTCAAAACTCACGGCCCGCT ACAAGCAGGTGAGGCGGGGAACATTTTGGGCACCACCGGTGAAGCGGCGCGTCAGCAGTTTGTTAAACTGGCCAAAAAAG GGCTAGTGGTGGCCGAAGCACAAACCCGCGGTGTGGGGCGGCCAATTCAGTTATGGCAATTAACCGAGAGCGGTAATACA CATTTTCCTGATGCCCATGGGGAGTTAGCTGTGCAACTTTTGCGCTTAATTCGTACACAATTGGGCGATAACGCACTGGA ATTACTGATCGATAGCCGTGAACAGGAAACTCGCGATCAATATTGTCAGGCGATGGTCGGGGTCAGTAATGTGGCTGAAC GCGTCGAGCGGTTGGTGGCTATCCGCACCGGTGAAGGATATATGGCACAATCGCAGGTCGAGGCCGATGGCACTATTTTG TTGATCGAGAATCATTGCCCTATCTGGGCGGCGGCGGCCAGTTGCCAGCGTTTTTGCCGTACCGAACTGGCGGTATTCCA GCAAGCATTGGGCGTGCCGGTTGAGCGGGTTGAACATATTTTATCTGGTGCTCGTCGGTGTACTTACCGCATTCACCCCG AATAA
Upstream 100 bases:
>100_bases GACTTTTTAGATAAAGAATGCATGTTAGATAAACAATACATATTAGATAAACAGTGCATGAGCCAAAAATAAAAAATGTT TCAGTAATACCGGGGAAGAG
Downstream 100 bases:
>100_bases TTATGATGACCGGGAGCTTGTCGCCAGGGGAAAATGGGGAGCAGTGCGGATAAGCCAAAGGACATTATCCGCATGTTTTA TCACGGTGTTTACTATTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: ArsR Family Transcriptional Regulator; Regulatory Protein ArsR; Transcriptional Regulator TrmB; DeoR Family Transcriptional Regulator; Transcriptional Regulatory Protein; HTH Domain Family; Transcriptional Regulator ArsR Family; Helix-Turn-Helix Type; Sugar-Specific Transcriptional Regulator TrmB; HTH Domain Family Protein; Transcription Regulator Protein; ArsR Transcriptional Regulator; MarR Family Transcriptional Regulator; Regulatory Proteins AsnC Family Protein; Transcriptional Regulator DeoR Family; Transcriptional Regulator Protein; Iron-Sulfur Cluster Biosynthesis Transcriptional Regulator
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MNIDHGARQPQSVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKLAKKGLVVAEAQTRGVGRPIQLWQLTESGNT HFPDAHGELAVQLLRLIRTQLGDNALELLIDSREQETRDQYCQAMVGVSNVAERVERLVAIRTGEGYMAQSQVEADGTIL LIENHCPIWAAAASCQRFCRTELAVFQQALGVPVERVEHILSGARRCTYRIHPE
Sequences:
>Translated_214_residues MNIDHGARQPQSVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKLAKKGLVVAEAQTRGVGRPIQLWQLTESGNT HFPDAHGELAVQLLRLIRTQLGDNALELLIDSREQETRDQYCQAMVGVSNVAERVERLVAIRTGEGYMAQSQVEADGTIL LIENHCPIWAAAASCQRFCRTELAVFQQALGVPVERVEHILSGARRCTYRIHPE >Mature_214_residues MNIDHGARQPQSVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKLAKKGLVVAEAQTRGVGRPIQLWQLTESGNT HFPDAHGELAVQLLRLIRTQLGDNALELLIDSREQETRDQYCQAMVGVSNVAERVERLVAIRTGEGYMAQSQVEADGTIL LIENHCPIWAAAASCQRFCRTELAVFQQALGVPVERVEHILSGARRCTYRIHPE
Specific function: Unknown
COG id: COG2345
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23549; Mature: 23549
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIDHGARQPQSVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKLAKKGLVVAEA CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCEEEEH QTRGVGRPIQLWQLTESGNTHFPDAHGELAVQLLRLIRTQLGDNALELLIDSREQETRDQ HHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH YCQAMVGVSNVAERVERLVAIRTGEGYMAQSQVEADGTILLIENHCPIWAAAASCQRFCR HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEECCCCEEEEEECCCCHHHHHHHHHHHHH TELAVFQQALGVPVERVEHILSGARRCTYRIHPE HHHHHHHHHHCCCHHHHHHHHHHHHHCEEEECCC >Mature Secondary Structure MNIDHGARQPQSVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKLAKKGLVVAEA CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCEEEEH QTRGVGRPIQLWQLTESGNTHFPDAHGELAVQLLRLIRTQLGDNALELLIDSREQETRDQ HHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH YCQAMVGVSNVAERVERLVAIRTGEGYMAQSQVEADGTILLIENHCPIWAAAASCQRFCR HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEECCCCEEEEEECCCCHHHHHHHHHHHHH TELAVFQQALGVPVERVEHILSGARRCTYRIHPE HHHHHHHHHHCCCHHHHHHHHHHHHHCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA