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The map label for this gene is sufC [H]

Identifier: 153947283

GI number: 153947283

Start: 2017227

End: 2017973

Strand: Direct

Name: sufC [H]

Synonym: YpsIP31758_1743

Alternate gene names: 153947283

Gene position: 2017227-2017973 (Clockwise)

Preceding gene: 153949039

Following gene: 153947648

Centisome position: 42.71

GC content: 45.11

Gene sequence:

>747_bases
ATGTTAAGTATTAAGAATTTAAAAGTTAGCGTTGAAGGTAATGAAATCCTCAAAGGTTTAGATCTGGAGATCAAACCGGG
TGAAGTACACGCTATCATGGGGCCGAACGGCTCAGGGAAAAGTACTTTATCAGCGGCATTGGCAGGGCGTGAAGAGTATG
AAGTCACCGAAGGTGAAGTCACTTTTAAAGGAAAAAACTTACTCGAACTTGCCCCAGAAGATCGTGCAGGGGAAGGTGTC
TTTTTAGCTTTCCAGTATCCGGTAGAAATCCCCGGTGTCAGTAACCATTTCTTCCTGCAAACCTCGGTTAATGCCGTGCG
TAAATATCGTCAGCAGGCGCCATTGGACCGCTTTGATTTCTCTGATTTTATTGAAGAAAAAATTGCCTTGCTGAAAATGC
CGGCTGATTTGCTGACCCGCTCGGTCAATGTGGGTTTCTCCGGTGGTGAGAAGAAACGTAATGATATTCTGCAGATGGCA
GCATTAGAGCCTTCGTTGTGTATTCTGGATGAGACAGATTCTGGGCTGGATATTGATGCACTGAAAATCGTGGCCAATGG
CGTTAACTCACTGCGCAATGAGAACCGCTCATTTATTATCGTTACCCACTACCAACGTATTCTGGATTACGTTAAACCTG
ATTTCGTCCATGTGTTGTATCAGGGGCGGATCATTAAATCGGGTGATTTCACGTTAGTGAAACAGTTGGAGGAGCAAGGC
TATGGCTGGCTTACCGACCAACAGTAA

Upstream 100 bases:

>100_bases
AGGCCCGCGGATGGGATGAGTAACGAGAGCGCCAACCCCCTGCCGTCTGAAAGATGAAGGTATAAATAAAGTTTTGCGTC
ACGGCGCACCAAGGAACTCT

Downstream 100 bases:

>100_bases
CGTTCTGGAAAGACAGCGGCTAGAACAGCAGCGACGAGAACAACAGCGGATTGATGCATTAAAGCATTTCGGTCAGTTGT
TTACGCAGCGTCAGATCGAA

Product: cysteine desulfurase ATPase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLSIKNLKVSVEGNEILKGLDLEIKPGEVHAIMGPNGSGKSTLSAALAGREEYEVTEGEVTFKGKNLLELAPEDRAGEGV
FLAFQYPVEIPGVSNHFFLQTSVNAVRKYRQQAPLDRFDFSDFIEEKIALLKMPADLLTRSVNVGFSGGEKKRNDILQMA
ALEPSLCILDETDSGLDIDALKIVANGVNSLRNENRSFIIVTHYQRILDYVKPDFVHVLYQGRIIKSGDFTLVKQLEEQG
YGWLTDQQ

Sequences:

>Translated_248_residues
MLSIKNLKVSVEGNEILKGLDLEIKPGEVHAIMGPNGSGKSTLSAALAGREEYEVTEGEVTFKGKNLLELAPEDRAGEGV
FLAFQYPVEIPGVSNHFFLQTSVNAVRKYRQQAPLDRFDFSDFIEEKIALLKMPADLLTRSVNVGFSGGEKKRNDILQMA
ALEPSLCILDETDSGLDIDALKIVANGVNSLRNENRSFIIVTHYQRILDYVKPDFVHVLYQGRIIKSGDFTLVKQLEEQG
YGWLTDQQ
>Mature_248_residues
MLSIKNLKVSVEGNEILKGLDLEIKPGEVHAIMGPNGSGKSTLSAALAGREEYEVTEGEVTFKGKNLLELAPEDRAGEGV
FLAFQYPVEIPGVSNHFFLQTSVNAVRKYRQQAPLDRFDFSDFIEEKIALLKMPADLLTRSVNVGFSGGEKKRNDILQMA
ALEPSLCILDETDSGLDIDALKIVANGVNSLRNENRSFIIVTHYQRILDYVKPDFVHVLYQGRIIKSGDFTLVKQLEEQG
YGWLTDQQ

Specific function: Has low ATPase activity. The SufBCD complex acts synergistically with SufE to stimulate the cysteine desulfurase activity of SufS. The SufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May f

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787972, Length=248, Percent_Identity=82.6612903225807, Blast_Score=430, Evalue=1e-122,
Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=29.9559471365639, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=28.5087719298246, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789864, Length=240, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=236, Percent_Identity=23.728813559322, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=236, Percent_Identity=27.9661016949153, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI212646699, Length=216, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=217, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=215, Percent_Identity=26.9767441860465, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=26.7543859649123, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=226, Percent_Identity=28.7610619469027, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71984940, Length=215, Percent_Identity=29.7674418604651, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=236, Percent_Identity=28.8135593220339, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=205, Percent_Identity=26.8292682926829, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641342, Length=249, Percent_Identity=24.8995983935743, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27605; Mature: 27605

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIKNLKVSVEGNEILKGLDLEIKPGEVHAIMGPNGSGKSTLSAALAGREEYEVTEGEV
CCCEEEEEEEECHHHHHCCCCCEECCCCEEEEECCCCCCHHHHHHHHCCCCCCEEECCEE
TFKGKNLLELAPEDRAGEGVFLAFQYPVEIPGVSNHFFLQTSVNAVRKYRQQAPLDRFDF
EECCCCEEEECCCCCCCCEEEEEEECCEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCCH
SDFIEEKIALLKMPADLLTRSVNVGFSGGEKKRNDILQMAALEPSLCILDETDSGLDIDA
HHHHHHHHHHHCCCHHHHHHEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
LKIVANGVNSLRNENRSFIIVTHYQRILDYVKPDFVHVLYQGRIIKSGDFTLVKQLEEQG
HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCHHHEEEEEECEEEECCCHHHHHHHHHCC
YGWLTDQQ
CCEECCCC
>Mature Secondary Structure
MLSIKNLKVSVEGNEILKGLDLEIKPGEVHAIMGPNGSGKSTLSAALAGREEYEVTEGEV
CCCEEEEEEEECHHHHHCCCCCEECCCCEEEEECCCCCCHHHHHHHHCCCCCCEEECCEE
TFKGKNLLELAPEDRAGEGVFLAFQYPVEIPGVSNHFFLQTSVNAVRKYRQQAPLDRFDF
EECCCCEEEECCCCCCCCEEEEEEECCEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCCH
SDFIEEKIALLKMPADLLTRSVNVGFSGGEKKRNDILQMAALEPSLCILDETDSGLDIDA
HHHHHHHHHHHCCCHHHHHHEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
LKIVANGVNSLRNENRSFIIVTHYQRILDYVKPDFVHVLYQGRIIKSGDFTLVKQLEEQG
HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCHHHEEEEEECEEEECCCHHHHHHHHHCC
YGWLTDQQ
CCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]