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The map label for this gene is ycjO [C]

Identifier: 153947207

GI number: 153947207

Start: 2496695

End: 2497537

Strand: Reverse

Name: ycjO [C]

Synonym: YpsIP31758_2171

Alternate gene names: 153947207

Gene position: 2497537-2496695 (Counterclockwise)

Preceding gene: 153948120

Following gene: 153947854

Centisome position: 52.88

GC content: 51.96

Gene sequence:

>843_bases
ATGCAAAACTCACGCAGCAGGCGTTTACTCTGCCGTTACTTGGTTTCGTTTTACACGCTGGGTTACGCCATCTATCTGTC
AGTCCACGACATCGATCTGATGTCGCCTCCGCCATTTGATTTCATCGGCATGGCGAACTTTATTGAGGTGTTACAAGAGC
CACGGATGTGGTCATCCCTTTGGAACACACTGGTTTATGTGGCGGGTTCAACGGTAGCAGAGTTGGTGCTTGGCAGTGCG
ATTGCGTTGTTTATAAGCCGTGACTTTTTTGGCCGTAAGCTGGTACGTGCGCTGTTACTGCTGCCAATGATTGTCACACC
GATTGTTGCTGGGCTTATCTGGCGTATTTTTTACGATCCAAACGCCGGTTTATTTAACTGGCTGGCCGGCCTGATCGGTA
TTCCGCCGATTGACTGGTTAGGTAACCCCAGCACCGCGATGGCTTCGTTGATCCTGGCCGATATCTGGCAGTGGACGCCG
TTTATCATTTTACTGGTTTCAGCCGGTCTGGATGCGTTACCCAGTGAACCGCTAGAGGCGGCCGAGCTGGATGGCGCGCG
CGGTTGGCGGCTACTGGCCTTTATTAAGCTACCAATGATGAAACCCATCATTCTGATGGCGTTGTTCCTGCGGATGATCG
ACGCCTTCAAATCCTTCGACCTGATCTACGTGATGACCCGAGGTGGCCCGGCGTTGGCAACGGAAACCACCAACATGTAC
GCCTATCTTACCGGGTTTCAGGATTTCCGTATCAGCGCGGCGGTGGTGATTGCCATCATCAATACGCTACTGGTGATCGC
GGTACTGTCATTTGCCAGTAAAAAGGTGATGAAAGATGAGTGA

Upstream 100 bases:

>100_bases
ACCCGTAATGATAAAGCGTTGTCCCGTTAATCGCTTTCCGTCAGTGCAGTTGCGCACTGACGGAAATGAAATTCTTACGC
AGGTTTAGGTAAAACTATGA

Downstream 100 bases:

>100_bases
TTCTTTGAAGTTTATCTGCCAGAGAACGGGCTTCTATCTCCTGTTGGTGGTGATCTTGGTGTTTTTTCTGCTGCCGATTT
ACTGGTTGGTGACGATGTCA

Product: carbohydrate ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MQNSRSRRLLCRYLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSLWNTLVYVAGSTVAELVLGSA
IALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILADIWQWTP
FIILLVSAGLDALPSEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALATETTNMY
AYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE

Sequences:

>Translated_280_residues
MQNSRSRRLLCRYLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSLWNTLVYVAGSTVAELVLGSA
IALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILADIWQWTP
FIILLVSAGLDALPSEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALATETTNMY
AYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE
>Mature_280_residues
MQNSRSRRLLCRYLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSLWNTLVYVAGSTVAELVLGSA
IALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILADIWQWTP
FIILLVSAGLDALPSEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALATETTNMY
AYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=240, Percent_Identity=28.75, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789861, Length=260, Percent_Identity=28.8461538461538, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790465, Length=271, Percent_Identity=27.3062730627306, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87082099, Length=233, Percent_Identity=26.6094420600858, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31265; Mature: 31265

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNSRSRRLLCRYLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSL
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHH
WNTLVYVAGSTVAELVLGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NAGLFNWLAGLIGIPPIDWLGNPSTAMASLILADIWQWTPFIILLVSAGLDALPSEPLEA
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
AELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALATETTNMY
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCE
AYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNSRSRRLLCRYLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSL
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHH
WNTLVYVAGSTVAELVLGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NAGLFNWLAGLIGIPPIDWLGNPSTAMASLILADIWQWTPFIILLVSAGLDALPSEPLEA
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
AELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALATETTNMY
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCE
AYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]