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The map label for this gene is rhaS

Identifier: 153947203

GI number: 153947203

Start: 4228810

End: 4229631

Strand: Reverse

Name: rhaS

Synonym: YpsIP31758_3754

Alternate gene names: 153947203

Gene position: 4229631-4228810 (Counterclockwise)

Preceding gene: 153949889

Following gene: 153950236

Centisome position: 89.55

GC content: 47.69

Gene sequence:

>822_bases
ATGACTGTATTGCACAGTATTGATTTTTTCTCTTCCAGCTCAGCACCTGTGGCGATTGAAGCGCGTGCGCCGCAATCGGC
ATTTCCTGAGCATCATCATGATTTTTATGAAATTGTTATTGTAGAAGAGGGGGCTGGCGTACATGTTTTTAATGGCAATC
CCTACACATTAAGTCGCGGTTGCGTCTGTTTTGTCCGTGACCATGATCGCCATTTGTTTGAATCCACGGATGATCTGTTC
CTCACCAACGTATTGTTTCGTGCCCCAGATGCCTTTCGCTTTTTATCTGGTGTCGGGCACTTCCTGCCTCGAGAATGTGA
TGGGGTCTATCCCTCCCATTGGCGGGTTAACGGCCAGGTTTTACAGCAAATAAAGTGCTTGATTGCTTGTCTGGAACACG
CCCCGAAAAGTGATCAGGTTGAGGATATCGCTCTGCATGAAAGTGTTTTTATGCAGCTATTGGTGAAACTGTGGCAAGGG
TGTCAGACGCAGGCAGGGGATGATCAGGAAGGGCGGTTATACCAACTGTTGGATTGGCTACAAAATAACTATAGCGAGGC
GGTTGAATGGCCGGAATTGGCAGATCGCTTTGCATTGCCATTGCGTACTCTACATCGCCAGTTAAAAAATAAGACCGGGA
TGACGCCCCAACGCTATCTGACACGTTTGCGCTTACTGCAAGCCCGTCATCAACTGTGTTACAGCGACAATAGCGTCACT
GACATTGCTTATCTGTGTGGTTTTGGCGACAGCAACCACTTCTCAACTTTATTTAAGCGAGAGTTTTCGCAGTCTCCCCG
TGATTTGCGTAGCCAACTTTAG

Upstream 100 bases:

>100_bases
TTTTAATGTCAAAAATTGAAGGTTTAGTCATCACTGCTGCTTTTACTATCGAGGACTGAAGCAGGGCGATTTCGCCGTGC
CTGTCGAAAGAGGGCAAAAG

Downstream 100 bases:

>100_bases
CCGCTTGAATTGCCCTGGCAAGAAAGGGTGTGAAGGGTATTACGGTAAAAATTGAAGGGTATCACGGTAAAAATTGGCCG
TTTCAAGATAATGAACAAGT

Product: transcriptional activator RhaS

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRGCVCFVRDHDRHLFESTDDLF
LTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQG
CQTQAGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNSVT
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL

Sequences:

>Translated_273_residues
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRGCVCFVRDHDRHLFESTDDLF
LTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQG
CQTQAGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNSVT
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL
>Mature_272_residues
TVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRGCVCFVRDHDRHLFESTDDLFL
TNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQGC
QTQAGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNSVTD
IAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL

Specific function: Activates expression of the rhaBAD and rhaT operons

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains

Homologues:

Organism=Escherichia coli, GI1790339, Length=270, Percent_Identity=60.3703703703704, Blast_Score=339, Evalue=1e-94,
Organism=Escherichia coli, GI171474011, Length=266, Percent_Identity=31.5789473684211, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAS_YERP3 (A7FN80)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001402708.1
- ProteinModelPortal:   A7FN80
- SMR:   A7FN80
- STRING:   A7FN80
- GeneID:   5387860
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_3754
- eggNOG:   COG2207
- HOGENOM:   HBG467453
- OMA:   ITTIAHA
- ProtClustDB:   PRK13503
- BioCyc:   YPSE349747:YPSIP31758_3754-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01534
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710
- Gene3D:   G3DSA:1.10.10.60
- Gene3D:   G3DSA:2.60.120.10
- PRINTS:   PR00032
- SMART:   SM00342

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC; SSF51215 AraC_binding; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 31385; Mature: 31254

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRG
CCEEECCHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEECCC
CVCFVRDHDRHLFESTDDLFLTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQV
CEEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCEEECHHH
LQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQGCQTQAGDDQEGRLYQLLDWL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNSVT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure 
TVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRG
CEEECCHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEECCC
CVCFVRDHDRHLFESTDDLFLTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQV
CEEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCEEECHHH
LQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQGCQTQAGDDQEGRLYQLLDWL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNSVT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA