Click here to switch to the map view.

The map label for this gene is ygeA [H]

Identifier: 153947122

GI number: 153947122

Start: 1652197

End: 1652889

Strand: Reverse

Name: ygeA [H]

Synonym: YpsIP31758_1412

Alternate gene names: 153947122

Gene position: 1652889-1652197 (Counterclockwise)

Preceding gene: 153949972

Following gene: 153947507

Centisome position: 34.99

GC content: 46.9

Gene sequence:

>693_bases
ATGAAAATTTTAGGCCTTATTGGTGGCATGAGTTGGGAATCAACCATTCCCTATTACAGAATGATTAACCAGCACGTTAA
AGCACAATTAGGCGGCTTACACAGCGCTAAAATTATTCTCTACAGTGTGGACTTTCATGAGATTGAACAGCTTCAGGCAA
AAGGTGACTGGCAAACAGCCGCTCAATTACTCTCTAATGCCGCTATCTCATTAAAACATGCTGGCGCGGAGGTTATCGTG
GTGTGCACCAATACCATGCACAAAGTGGCCGATGATATTGAAGCAGCCTGCGGGTTGCCCTTACTGCACATTGCTGATGC
CACTGCCGTCCAAATTAAACAACAAGGAATAGATAAGATCGGTCTATTAGGGACCCGCTATACCATGGAGCAAGACTTTT
ACCGTGGCCGTTTAACAGAAAAACACGGCATTGAGGTTATCACTCCAGACGATACAGACCGAGAGGCAGTTAACCGTATT
ATTTATGAAGAGCTCTGCTTGGGGATCATCAGTGAAACCTCCCGGGATGCCTATCGCCGGGTGATAAAGAAACTCGAAGC
ACAGGGTGTGCAAGGGATTATTTTTGGGTGTACCGAAATCACGCTACTGGTTAACGCGCAAGATGCCTCAGTACCGGTGT
TTGATACCACAGCGATACATGCCAGCGCCGCGGCTGATTACGCACTGCAATAA

Upstream 100 bases:

>100_bases
GATGGCTTTCACTTATAACGTGGGGGCGCTGTCGCCCTTCAAGATGCAGGGAGTTAGCTGCCCTTGCTCACCCCAGTCAC
TGAGTGATGGAATAATAATG

Downstream 100 bases:

>100_bases
TTAAGCATGTCACTCACAATAAAAGAAGAGGCCCGCAACCCTGTGACTCACCATAGTGAAAAACCTATGTTGTAAATAAA
ACGTTTGGTCGAAAATAAAA

Product: aspartate racemase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIV
VCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQDFYRGRLTEKHGIEVITPDDTDREAVNRI
IYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ

Sequences:

>Translated_230_residues
MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIV
VCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQDFYRGRLTEKHGIEVITPDDTDREAVNRI
IYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ
>Mature_230_residues
MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIV
VCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQDFYRGRLTEKHGIEVITPDDTDREAVNRI
IYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=229, Percent_Identity=58.9519650655022, Blast_Score=291, Evalue=3e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: NA

Molecular weight: Translated: 25236; Mature: 25236

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTA
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHH
AQLLSNAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKI
HHHHHHHHHEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCHH
GLLGTRYTMEQDFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRR
HCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
VIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ
HHHHHHHCCCCEEEEEEEEEEEEEECCCCCCCEEECHHHHHHHHHHHCCC
>Mature Secondary Structure
MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTA
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHH
AQLLSNAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKI
HHHHHHHHHEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCHH
GLLGTRYTMEQDFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRR
HCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
VIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ
HHHHHHHCCCCEEEEEEEEEEEEEECCCCCCCEEECHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]