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The map label for this gene is ygfZ [C]

Identifier: 153946923

GI number: 153946923

Start: 1055254

End: 1056246

Strand: Reverse

Name: ygfZ [C]

Synonym: YpsIP31758_0872

Alternate gene names: 153946923

Gene position: 1056246-1055254 (Counterclockwise)

Preceding gene: 153947943

Following gene: 153947012

Centisome position: 22.36

GC content: 51.96

Gene sequence:

>993_bases
ATGGCCTATCATACTCCGTTTGCTGCACAGCCACCGGTCGCCTCTTCCGGGCTACCCTTAACACTGATCTCACTCGATGA
CTGGGCATTGGTTACCTTAACGGGTGCTGATCGGGTCAAATATCTACAAGGACAAGTCACGGCGGATATCGATGCGCTAT
CTGCTGATCAACATGTACTTTGTGCGCACTGTGATGCCAAAGGGAAAATGTGGAGTAACTTACGGCTGTTTTATCGTGGT
GAGGGTTTGGCCTTTATAGAGCGGCGCAGCCTGCTAGATAACCAGTTGAGTGAGTTGAAGAAATACGCTGTATTCTCCAA
GGTGGTCATTGCACCACAGCCAGATGCGGTACTCATTGGGGTTGCAGGTAGCCAGGCCAAAACCGCGCTGGCGGAAATCT
TTACTGAATTGCCCAGTGCAGAACACCCGGTAACGCAGATGGGTAATAGCACGCTGTTACACTTCTCACTGCCTGCTGAA
CGTTTTCTGTTAGTGACGGATACAGAGCAGGCGCAGCAGTTGGTTGAGAAACTGGCTGGTCGGGCGCAATTTAACGACAG
CAAACAGTGGCTGGCACTGGACATCGAGGCCGGTTTCCCCATCATTGATGCTGCTAACAGTGCACAGTTTATTCCTCAGG
CAACGAATATTCAGGCGTTAAATGGTATCAGCTTCACGAAAGGCTGTTATACCGGGCAGGAAATGGTCGCCAGAGCAAAG
TACCGGGGTGCCAATAAGCGGGCGCTGTATTGGTTGGCAGGTAATGCCAGCCGAGTACCCGCAGCAGGTGAAGATTTAGA
GTGGCAGCTAGGCGAGAATTGGCGTCGTACGGGTACCGTGCTGTCAGCCATTCAACTCAATGATGGCACCGTGTGGGTTC
AGGCTGTGTTGAATAATGATCTGGCCGCAGATAGCGTGTTGCGGGTACGTGATGATGCGCTGGGTACGCTAGCCATTCAG
CCTTTGCCCTACTCACTCGCCGAAGATAAATAA

Upstream 100 bases:

>100_bases
AGGCGAACAATGGTGAATCTATGGAATTACTGCTTGCAAAGCTACCCGGCTATTTTACCATTGGGCAATTAGCTCACCGT
TTCTCATTCCAGGATGACAT

Downstream 100 bases:

>100_bases
TAAAGAGTTCTACTCTATAGAGACCGGTTAACCGGTCTCTGTATTTTGTTTTATATCAAATAGATGGGTGGGTTATTCAT
CTAACTCGCCATCAGGCTGT

Product: global regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MAYHTPFAAQPPVASSGLPLTLISLDDWALVTLTGADRVKYLQGQVTADIDALSADQHVLCAHCDAKGKMWSNLRLFYRG
EGLAFIERRSLLDNQLSELKKYAVFSKVVIAPQPDAVLIGVAGSQAKTALAEIFTELPSAEHPVTQMGNSTLLHFSLPAE
RFLLVTDTEQAQQLVEKLAGRAQFNDSKQWLALDIEAGFPIIDAANSAQFIPQATNIQALNGISFTKGCYTGQEMVARAK
YRGANKRALYWLAGNASRVPAAGEDLEWQLGENWRRTGTVLSAIQLNDGTVWVQAVLNNDLAADSVLRVRDDALGTLAIQ
PLPYSLAEDK

Sequences:

>Translated_330_residues
MAYHTPFAAQPPVASSGLPLTLISLDDWALVTLTGADRVKYLQGQVTADIDALSADQHVLCAHCDAKGKMWSNLRLFYRG
EGLAFIERRSLLDNQLSELKKYAVFSKVVIAPQPDAVLIGVAGSQAKTALAEIFTELPSAEHPVTQMGNSTLLHFSLPAE
RFLLVTDTEQAQQLVEKLAGRAQFNDSKQWLALDIEAGFPIIDAANSAQFIPQATNIQALNGISFTKGCYTGQEMVARAK
YRGANKRALYWLAGNASRVPAAGEDLEWQLGENWRRTGTVLSAIQLNDGTVWVQAVLNNDLAADSVLRVRDDALGTLAIQ
PLPYSLAEDK
>Mature_329_residues
AYHTPFAAQPPVASSGLPLTLISLDDWALVTLTGADRVKYLQGQVTADIDALSADQHVLCAHCDAKGKMWSNLRLFYRGE
GLAFIERRSLLDNQLSELKKYAVFSKVVIAPQPDAVLIGVAGSQAKTALAEIFTELPSAEHPVTQMGNSTLLHFSLPAER
FLLVTDTEQAQQLVEKLAGRAQFNDSKQWLALDIEAGFPIIDAANSAQFIPQATNIQALNGISFTKGCYTGQEMVARAKY
RGANKRALYWLAGNASRVPAAGEDLEWQLGENWRRTGTVLSAIQLNDGTVWVQAVLNNDLAADSVLRVRDDALGTLAIQP
LPYSLAEDK

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family

Homologues:

Organism=Escherichia coli, GI1789265, Length=328, Percent_Identity=68.2926829268293, Blast_Score=452, Evalue=1e-128,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): YGFZ_YERP3 (A7FF28)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001399856.1
- ProteinModelPortal:   A7FF28
- SMR:   A7FF28
- STRING:   A7FF28
- GeneID:   5385968
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_0872
- eggNOG:   COG0354
- HOGENOM:   HBG700628
- OMA:   GAHCDPK
- ProtClustDB:   PRK09559
- BioCyc:   YPSE349747:YPSIP31758_0872-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01175
- InterPro:   IPR017703
- InterPro:   IPR006222
- TIGRFAMs:   TIGR03317

Pfam domain/function: PF01571 GCV_T

EC number: NA

Molecular weight: Translated: 35908; Mature: 35777

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: BINDING 28-28 BINDING 190-190

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYHTPFAAQPPVASSGLPLTLISLDDWALVTLTGADRVKYLQGQVTADIDALSADQHVL
CCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCEEEECCCEEECCCCCCCCCEEE
CAHCDAKGKMWSNLRLFYRGEGLAFIERRSLLDNQLSELKKYAVFSKVVIAPQPDAVLIG
EEECCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEE
VAGSQAKTALAEIFTELPSAEHPVTQMGNSTLLHFSLPAERFLLVTDTEQAQQLVEKLAG
ECCCHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHC
RAQFNDSKQWLALDIEAGFPIIDAANSAQFIPQATNIQALNGISFTKGCYTGQEMVARAK
CCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHH
YRGANKRALYWLAGNASRVPAAGEDLEWQLGENWRRTGTVLSAIQLNDGTVWVQAVLNND
HCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHCCEEEEEEEECCCEEEEEEECCCC
LAADSVLRVRDDALGTLAIQPLPYSLAEDK
CCCCCEEEECCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
AYHTPFAAQPPVASSGLPLTLISLDDWALVTLTGADRVKYLQGQVTADIDALSADQHVL
CCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCEEEECCCEEECCCCCCCCCEEE
CAHCDAKGKMWSNLRLFYRGEGLAFIERRSLLDNQLSELKKYAVFSKVVIAPQPDAVLIG
EEECCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEE
VAGSQAKTALAEIFTELPSAEHPVTQMGNSTLLHFSLPAERFLLVTDTEQAQQLVEKLAG
ECCCHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHC
RAQFNDSKQWLALDIEAGFPIIDAANSAQFIPQATNIQALNGISFTKGCYTGQEMVARAK
CCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHH
YRGANKRALYWLAGNASRVPAAGEDLEWQLGENWRRTGTVLSAIQLNDGTVWVQAVLNND
HCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHCCEEEEEEEECCCEEEEEEECCCC
LAADSVLRVRDDALGTLAIQPLPYSLAEDK
CCCCCEEEECCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA