| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is yciK [H]
Identifier: 153946851
GI number: 153946851
Start: 2231212
End: 2231973
Strand: Direct
Name: yciK [H]
Synonym: YpsIP31758_1926
Alternate gene names: 153946851
Gene position: 2231212-2231973 (Clockwise)
Preceding gene: 153950840
Following gene: 153948399
Centisome position: 47.24
GC content: 52.23
Gene sequence:
>762_bases ATGCATTATCAACCTAAACATGACCTGCTCAATCAGCGCATTATTCTCGTGACTGGCGCAGGAGATGGTATTGGTCGTGA AGCGGCCCTGACTTACGCTCGGTTTGGTGCTCGCCTGATATTAGTGGGCCGCACCGAAAGTAAATTGCTCGCGGTAAAAA AGCAGATAGCTGATGCGGGCGGTTTGCCAGCGTTAGTGCTGTCACTGGATCTATTGCATGCCACCGCCGCGGATTGTCAG CAACTTGCTGACACCGTAAGTGCACAGGTCCCTAGGCTGGATGGCGTCTTACATAACGCCGGTTTATTGGGTGAAGTTGC CCCCATGTCCGAGCAAAGCATCGCCGTCTGGCAAGACGTCATGCAAGTGAATGTCAATGCAACATTTATGCTAACTCAAG CATTACTGCCATTATTACTGAAATCCCCTAGCGCCTCTCTGGTGTTCACCAGTTCCAGCGTTGGCCGTCAGGGACGTGCA GGCTGGGGAGCTTATTCGGTCTCAAAATTTGCCACGGAAGGCATGATGCAAGTACTGGCCGAGGAGTATAAACAGAGCAA CCTGCGGGTTAACTGCATCAATCCCGGAGGAACCCGAACACAAATGCGGGCGACCGCATTCCCCGATGAAGATGCGAGCA AGTTGAAAACGCCAGCAGATATTATGCCGTTGTACCTCTATTTGATGGGCGATGACAGCCGTAGAAAAACGGGGATCAGC TTCGATGCACAGCCCGGCCGTAAACCTGGTCCAGCTGAATAA
Upstream 100 bases:
>100_bases CGTAAATGAAAAATTGCATTGGTTTCACTTAAATATAAGAATGAGAAAGATCACACGGTATGGACGGGAAGAGTTCACTC CGCCAGCAAGAGGAATAATT
Downstream 100 bases:
>100_bases AAGGAACGTAATCATTATGTCTGAAGATCGCCACCAGCAGCGCCAACAACGATTAAAAGAAAAGGTAGATTCACGGATTG CTGCAGCACAGGAAGTTCGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MHYQPKHDLLNQRIILVTGAGDGIGREAALTYARFGARLILVGRTESKLLAVKKQIADAGGLPALVLSLDLLHATAADCQ QLADTVSAQVPRLDGVLHNAGLLGEVAPMSEQSIAVWQDVMQVNVNATFMLTQALLPLLLKSPSASLVFTSSSVGRQGRA GWGAYSVSKFATEGMMQVLAEEYKQSNLRVNCINPGGTRTQMRATAFPDEDASKLKTPADIMPLYLYLMGDDSRRKTGIS FDAQPGRKPGPAE
Sequences:
>Translated_253_residues MHYQPKHDLLNQRIILVTGAGDGIGREAALTYARFGARLILVGRTESKLLAVKKQIADAGGLPALVLSLDLLHATAADCQ QLADTVSAQVPRLDGVLHNAGLLGEVAPMSEQSIAVWQDVMQVNVNATFMLTQALLPLLLKSPSASLVFTSSSVGRQGRA GWGAYSVSKFATEGMMQVLAEEYKQSNLRVNCINPGGTRTQMRATAFPDEDASKLKTPADIMPLYLYLMGDDSRRKTGIS FDAQPGRKPGPAE >Mature_253_residues MHYQPKHDLLNQRIILVTGAGDGIGREAALTYARFGARLILVGRTESKLLAVKKQIADAGGLPALVLSLDLLHATAADCQ QLADTVSAQVPRLDGVLHNAGLLGEVAPMSEQSIAVWQDVMQVNVNATFMLTQALLPLLLKSPSASLVFTSSSVGRQGRA GWGAYSVSKFATEGMMQVLAEEYKQSNLRVNCINPGGTRTQMRATAFPDEDASKLKTPADIMPLYLYLMGDDSRRKTGIS FDAQPGRKPGPAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=28.2157676348548, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=27.1255060728745, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI10190704, Length=189, Percent_Identity=26.4550264550265, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=28.4552845528455, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4503817, Length=205, Percent_Identity=27.3170731707317, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI7657478, Length=222, Percent_Identity=29.2792792792793, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI40807363, Length=212, Percent_Identity=28.3018867924528, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI20149619, Length=214, Percent_Identity=27.1028037383178, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI40548397, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI214010158, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI214010156, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI22758144, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI5031737, Length=212, Percent_Identity=27.8301886792453, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI142976729, Length=214, Percent_Identity=28.0373831775701, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI32455239, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI5031765, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=27.34375, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=75.6, Blast_Score=375, Evalue=1e-105, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=26.0162601626016, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=30.7291666666667, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=29.5275590551181, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789378, Length=240, Percent_Identity=30.8333333333333, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=27.4111675126904, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1786812, Length=237, Percent_Identity=27.0042194092827, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787820, Length=212, Percent_Identity=23.5849056603774, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=23.2824427480916, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560150, Length=204, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17551412, Length=216, Percent_Identity=31.0185185185185, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71994604, Length=197, Percent_Identity=32.48730964467, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562906, Length=229, Percent_Identity=27.9475982532751, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562908, Length=193, Percent_Identity=29.0155440414508, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17568967, Length=247, Percent_Identity=27.9352226720648, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17544670, Length=218, Percent_Identity=30.2752293577982, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=27.4900398406374, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562990, Length=186, Percent_Identity=28.494623655914, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17560676, Length=210, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71997402, Length=256, Percent_Identity=26.171875, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=29.2682926829268, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560176, Length=191, Percent_Identity=29.8429319371728, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=28.7878787878788, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203117, Length=202, Percent_Identity=29.2079207920792, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=24.4131455399061, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17559104, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17570069, Length=216, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193203115, Length=200, Percent_Identity=29.5, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17564282, Length=183, Percent_Identity=28.4153005464481, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17562910, Length=211, Percent_Identity=24.1706161137441, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25152911, Length=203, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17508895, Length=214, Percent_Identity=28.5046728971963, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17563726, Length=244, Percent_Identity=25, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI212646214, Length=191, Percent_Identity=24.0837696335079, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI72000259, Length=184, Percent_Identity=26.6304347826087, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17538480, Length=212, Percent_Identity=24.5283018867925, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193210355, Length=220, Percent_Identity=28.1818181818182, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=241, Percent_Identity=27.8008298755187, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=30.8080808080808, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=230, Percent_Identity=29.1304347826087, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6319635, Length=148, Percent_Identity=28.3783783783784, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=30.5555555555556, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=31.3492063492063, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=30.4, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI23397609, Length=203, Percent_Identity=34.9753694581281, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=28.2786885245902, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=32.3232323232323, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643142, Length=197, Percent_Identity=34.010152284264, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24640492, Length=183, Percent_Identity=30.0546448087432, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI18859837, Length=227, Percent_Identity=30.3964757709251, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=28.2352941176471, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281364892, Length=184, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI45553409, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24647948, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24584744, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24647946, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574402, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=27.7486910994764, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27150; Mature: 27150
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHYQPKHDLLNQRIILVTGAGDGIGREAALTYARFGARLILVGRTESKLLAVKKQIADAG CCCCCCHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC GLPALVLSLDLLHATAADCQQLADTVSAQVPRLDGVLHNAGLLGEVAPMSEQSIAVWQDV CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHH MQVNVNATFMLTQALLPLLLKSPSASLVFTSSSVGRQGRAGWGAYSVSKFATEGMMQVLA HHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH EEYKQSNLRVNCINPGGTRTQMRATAFPDEDASKLKTPADIMPLYLYLMGDDSRRKTGIS HHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHCCCHHHHEEEEEEECCCCCCCCCCC FDAQPGRKPGPAE CCCCCCCCCCCCC >Mature Secondary Structure MHYQPKHDLLNQRIILVTGAGDGIGREAALTYARFGARLILVGRTESKLLAVKKQIADAG CCCCCCHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC GLPALVLSLDLLHATAADCQQLADTVSAQVPRLDGVLHNAGLLGEVAPMSEQSIAVWQDV CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHH MQVNVNATFMLTQALLPLLLKSPSASLVFTSSSVGRQGRAGWGAYSVSKFATEGMMQVLA HHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH EEYKQSNLRVNCINPGGTRTQMRATAFPDEDASKLKTPADIMPLYLYLMGDDSRRKTGIS HHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHCCCHHHHEEEEEEECCCCCCCCCCC FDAQPGRKPGPAE CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1885549 [H]