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The map label for this gene is xerC [H]

Identifier: 153937845

GI number: 153937845

Start: 3469528

End: 3470127

Strand: Direct

Name: xerC [H]

Synonym: CLC_3307

Alternate gene names: 153937845

Gene position: 3469528-3470127 (Clockwise)

Preceding gene: 153937407

Following gene: 153937781

Centisome position: 92.26

GC content: 28.83

Gene sequence:

>600_bases
ATGCCAGAAAATTCTAACAATAAGATGAAGTACTTAACACAACAAGAAGCAATTAGACTTTTTAATGCAATTATATTTTC
AGATAATTCTCATGCCGTTAGGGATTTAGCATTGTTTAGAGTAGCTTATAGATGTGGTTTAAGAGCCTCTGAAATTTCTC
TTATAAAGTTAGATGATTACAACGCAGATAAAGGAGATCTTTACTGCAAAAGATTAAAAGGTAGTAATAACAATACAATA
AGACTTGATGCTACAACTAAAAAAGCTCTTGATACATATATAAGGGATTATAAAATATCCTGTAATTCTGAAACATTGTT
TAAAAGTCAAAAAAACAATCCTATTTCTCGTCAAACTCTAGATTATTTAATGAAAAAATATTGTAAAATTGCTAATATTA
GTGATAAAAGCAAACATCATTTTCATACACTTAAACACACAACTGCTGTTCATTTAGCAGAGTCCGAAATGGATATTAAA
GAGCTTCAATGGTGGCTTGGACATAAGTCTGTTTCTAACACTGAAATTTATTTTCAATTTACTACAAAACAGCAAGAAAA
AATGTATATGAAACTTGAAGAAACAAGCGAAATGGTATAG

Upstream 100 bases:

>100_bases
AAATAAAATTTATTTATATATATTTACATTTGAACTAATAACCTGTATTATTAATTAGGCAAAATAAATATTTTGTACAA
TTATATGGAGGAAATTTGCT

Downstream 100 bases:

>100_bases
GCATTGTTATATTCCACATATTTATAATGTAAAAAGTTATTCATATTTTTAATATATTTGTACTAACACTGAGCTATTCC
CTTGAAGATATAAAAAGCTT

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MPENSNNKMKYLTQQEAIRLFNAIIFSDNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKGDLYCKRLKGSNNNTI
RLDATTKKALDTYIRDYKISCNSETLFKSQKNNPISRQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIK
ELQWWLGHKSVSNTEIYFQFTTKQQEKMYMKLEETSEMV

Sequences:

>Translated_199_residues
MPENSNNKMKYLTQQEAIRLFNAIIFSDNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKGDLYCKRLKGSNNNTI
RLDATTKKALDTYIRDYKISCNSETLFKSQKNNPISRQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIK
ELQWWLGHKSVSNTEIYFQFTTKQQEKMYMKLEETSEMV
>Mature_198_residues
PENSNNKMKYLTQQEAIRLFNAIIFSDNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKGDLYCKRLKGSNNNTIR
LDATTKKALDTYIRDYKISCNSETLFKSQKNNPISRQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKE
LQWWLGHKSVSNTEIYFQFTTKQQEKMYMKLEETSEMV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=194, Percent_Identity=28.8659793814433, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790767, Length=174, Percent_Identity=30.4597701149425, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790768, Length=174, Percent_Identity=25.2873563218391, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23323; Mature: 23192

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPENSNNKMKYLTQQEAIRLFNAIIFSDNSHAVRDLALFRVAYRCGLRASEISLIKLDDY
CCCCCCCCEEHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
NADKGDLYCKRLKGSNNNTIRLDATTKKALDTYIRDYKISCNSETLFKSQKNNPISRQTL
CCCCHHHEEEEECCCCCCEEEEECCHHHHHHHHHHHEEECCCCHHHHHCCCCCCCHHHHH
DYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQF
HHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEE
TTKQQEKMYMKLEETSEMV
CCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PENSNNKMKYLTQQEAIRLFNAIIFSDNSHAVRDLALFRVAYRCGLRASEISLIKLDDY
CCCCCCCEEHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
NADKGDLYCKRLKGSNNNTIRLDATTKKALDTYIRDYKISCNSETLFKSQKNNPISRQTL
CCCCHHHEEEEECCCCCCEEEEECCHHHHHHHHHHHEEECCCCHHHHHCCCCCCCHHHHH
DYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQF
HHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEE
TTKQQEKMYMKLEETSEMV
CCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]