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The map label for this gene is ygeV [H]

Identifier: 153937730

GI number: 153937730

Start: 2075817

End: 2077592

Strand: Reverse

Name: ygeV [H]

Synonym: CLC_1956

Alternate gene names: 153937730

Gene position: 2077592-2075817 (Counterclockwise)

Preceding gene: 153934654

Following gene: 153935029

Centisome position: 55.25

GC content: 27.03

Gene sequence:

>1776_bases
GTGTCTTTAAATAGTATAAAGAGCTCTGTTCAAGAGGTGGCGGAAGCTATAGCTGCAGTTCTTAAGGTGGATGTTACTAT
AATTGATAAAAATTTTAATAGAATTGCTGCCACTGGAAAATACAAAAAATTTATAGGGAACAAAATACCGGGAAAATGTT
TGTTTGAATTAGTTATGAAAGAGAAAAAAACTAATCATATAAAAAGATATTTAAAGGATAACGAAAAGAAGATAAATCCA
TCTGTATGTGAAAGCTGTGAGGCGAAGGAGAGATGTACAGAATATGCAACCATAGGTTACCCTATAATTATGGAGGATGA
AGTAATAGGAGTAATTGGCATAAATATTTTTAATGAAAAACAACTTAATATGATATCTAAAGAGTTTGATTCTATGATAA
CATTTTTAAATAGATTAAGTACATTACTTGTAGGAAATATTATTTATTATGATACTATAAAAAAATTACAAATTCAGACT
GAAGAAACCAATCATATAATAGATAGTTTAAGCCACGGTATAATGTGTGTAGATAACAATGGAATTTTAAAATATATTAA
TCATAAGGGAAAAAAACTATTAGATATTAAAGAGAAGTCATTAGTAAACACTAATATTAAAGATACAATATCAAACTTTA
ATATTAAACTTTTAAGTAAGGAATATAAGGGTAAAAGAATAAGTATCCATGGTAAAAATGAAAGTTTTTTAATTAAAAGT
AGTCCCATTATATTCAAAGGTGAAAGGGTAAGTAATATTATAGAATTTAATAAAAAAATTGATGAAGTTCAAGCTGCTTA
TAAGCTTTTTGCTAGTAGTAAAATTATAAAATTTGAAGATATAATGGGTAGTAGTAATAATATAAAAAATGTAAAACTCA
TTGCTAAAAATATTGCTAAAACTGATTCAACTGTGTTATTAAGAGGAGAAAGTGGTACAGGAAAGGAACTTTTTGCAAGA
GCTATACATTTTGAAAGCCAAAGGTGTGATGCTCCTTTTATAGCTGTTAATTGTGCTTCAATTCCAGATAATTTATTAGA
AAGTGAATTTTTTGGATATGAAGGAGGGGCTTTTTCAGGGGCAAAAAGGGAAGGTCAAATGGGGAAATTTGAACTTGCCA
ATGGAGGAACTATATTTTTAGATGAAATAGGTGATTTACCTTTGCATCTTCAACCTAAAATATTAAGAGTACTTCAAGAG
CAAAGTTTTACTAAAATTGGTGGTAAAGAAGAAATATGTGTAGATGTTAGAATAATAGCAGCTACCAATAGAGACCTTGA
AGCTATGGTTAAACATGGACAATTTAGACAGGATTTATATTATAGATTAAATGTAATACCTATATATTTACCTAGTCTTA
AAGATAGAGGGGAAGATATAATATTACTTAGTGAATATCTTATGGATAAATTTTGCGAAAGATCTAATCTAAAGATTAAA
CAGCTTTCAAAGGAAGTAAAGGATAGTTTTAAAAAGTATTCTTGGCCTGGAAACATAAGAGAACTAGAAAATGTAATAGA
ATATATAGTAAATACCACAAAGGAAAATATAATATATAATGAACATTTACCAAAATCCTTTAAAATATCTAAAGAAGATG
AAAAAAGTAATAAAAGTTTACAGGATAGACTTTATAAATATGAAAAAAATTTATTAATATCAATGATGGAGGAATATGGT
GAAGATGGAAAGGGGAAAGAGAGAATTGCTAAAGAACTAGATATTAATTTATCTACACTCTACAGAAAATTAAATAAATA
TAATTTGCAAAAGTAA

Upstream 100 bases:

>100_bases
CAAAAGGATATAGAAAACAAAGAGGGGAGGAGTTACGTTAAAACGAAAGCATTATATTTCTGTGCAAAATAATTTTAAAA
GTTTTACGTAACGAATAAAG

Downstream 100 bases:

>100_bases
GAATGTTTTTGCAAAGATGCAAAAATCCTTTAATATGAATGTGTAATGCATTAATTTTTATAATTAATAACAGGATTATT
TGCAAAAATGCAAAAATATA

Product: putative sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 590

Protein sequence:

>591_residues
MSLNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMKEKKTNHIKRYLKDNEKKINP
SVCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEKQLNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQT
EETNHIIDSLSHGIMCVDNNGILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNESFLIKS
SPIIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAKTDSTVLLRGESGTGKELFAR
AIHFESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSGAKREGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQE
QSFTKIGGKEEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIK
QLSKEVKDSFKKYSWPGNIRELENVIEYIVNTTKENIIYNEHLPKSFKISKEDEKSNKSLQDRLYKYEKNLLISMMEEYG
EDGKGKERIAKELDINLSTLYRKLNKYNLQK

Sequences:

>Translated_591_residues
MSLNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMKEKKTNHIKRYLKDNEKKINP
SVCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEKQLNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQT
EETNHIIDSLSHGIMCVDNNGILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNESFLIKS
SPIIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAKTDSTVLLRGESGTGKELFAR
AIHFESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSGAKREGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQE
QSFTKIGGKEEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIK
QLSKEVKDSFKKYSWPGNIRELENVIEYIVNTTKENIIYNEHLPKSFKISKEDEKSNKSLQDRLYKYEKNLLISMMEEYG
EDGKGKERIAKELDINLSTLYRKLNKYNLQK
>Mature_590_residues
SLNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMKEKKTNHIKRYLKDNEKKINPS
VCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEKQLNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQTE
ETNHIIDSLSHGIMCVDNNGILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNESFLIKSS
PIIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAKTDSTVLLRGESGTGKELFARA
IHFESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSGAKREGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQEQ
SFTKIGGKEEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIKQ
LSKEVKDSFKKYSWPGNIRELENVIEYIVNTTKENIIYNEHLPKSFKISKEDEKSNKSLQDRLYKYEKNLLISMMEEYGE
DGKGKERIAKELDINLSTLYRKLNKYNLQK

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=603, Percent_Identity=33.665008291874, Blast_Score=345, Evalue=5e-96,
Organism=Escherichia coli, GI1788550, Length=326, Percent_Identity=44.7852760736196, Blast_Score=271, Evalue=6e-74,
Organism=Escherichia coli, GI87082117, Length=321, Percent_Identity=43.613707165109, Blast_Score=262, Evalue=5e-71,
Organism=Escherichia coli, GI1790437, Length=289, Percent_Identity=43.598615916955, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1789087, Length=325, Percent_Identity=41.5384615384615, Blast_Score=249, Evalue=4e-67,
Organism=Escherichia coli, GI1790299, Length=263, Percent_Identity=42.9657794676806, Blast_Score=233, Evalue=4e-62,
Organism=Escherichia coli, GI1788905, Length=228, Percent_Identity=48.6842105263158, Blast_Score=231, Evalue=8e-62,
Organism=Escherichia coli, GI1786524, Length=243, Percent_Identity=43.6213991769547, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI1787583, Length=434, Percent_Identity=29.2626728110599, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI87082152, Length=235, Percent_Identity=45.1063829787234, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI87081872, Length=233, Percent_Identity=42.4892703862661, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI87081858, Length=460, Percent_Identity=26.5217391304348, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI1789828, Length=282, Percent_Identity=30.8510638297872, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 67544; Mature: 67413

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMK
CCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECCCHHHHHHCCCCCHHHHHHHHHH
EKKTNHIKRYLKDNEKKINPSVCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEK
HHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEECCCEEEEEEEEEECCH
QLNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQTEETNHIIDSLSHGIMCVDNN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHEEEECCHHHHHHHHHCCCEEEEECC
GILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNESFLIKS
CEEEEECCCCCEEEEEHHHHHHCCCHHHHHCCCCEEEEECCCCCCEEEEECCCCEEEEEC
SPIIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAK
CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCHHHHHHHHHCC
TDSTVLLRGESGTGKELFARAIHFESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSG
CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCC
AKREGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQEQSFTKIGGKEEICVDVRIIA
CCCCCCCCCEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
ATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIK
ECCCCHHHHHHCCCHHHHHHEEEEEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCCCHHH
QLSKEVKDSFKKYSWPGNIRELENVIEYIVNTTKENIIYNEHLPKSFKISKEDEKSNKSL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCEEECCCCCCCCCCCCCCCCCCHHH
QDRLYKYEKNLLISMMEEYGEDGKGKERIAKELDINLSTLYRKLNKYNLQK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMK
CHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECCCHHHHHHCCCCCHHHHHHHHHH
EKKTNHIKRYLKDNEKKINPSVCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEK
HHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEECCCEEEEEEEEEECCH
QLNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQTEETNHIIDSLSHGIMCVDNN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHEEEECCHHHHHHHHHCCCEEEEECC
GILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNESFLIKS
CEEEEECCCCCEEEEEHHHHHHCCCHHHHHCCCCEEEEECCCCCCEEEEECCCCEEEEEC
SPIIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAK
CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCHHHHHHHHHCC
TDSTVLLRGESGTGKELFARAIHFESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSG
CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCC
AKREGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQEQSFTKIGGKEEICVDVRIIA
CCCCCCCCCEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
ATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIK
ECCCCHHHHHHCCCHHHHHHEEEEEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCCCHHH
QLSKEVKDSFKKYSWPGNIRELENVIEYIVNTTKENIIYNEHLPKSFKISKEDEKSNKSL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCEEECCCCCCCCCCCCCCCCCCHHH
QDRLYKYEKNLLISMMEEYGEDGKGKERIAKELDINLSTLYRKLNKYNLQK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]