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The map label for this gene is cbiD

Identifier: 153937445

GI number: 153937445

Start: 1013418

End: 1014497

Strand: Direct

Name: cbiD

Synonym: CLC_0991

Alternate gene names: 153937445

Gene position: 1013418-1014497 (Clockwise)

Preceding gene: 153934945

Following gene: 153935805

Centisome position: 26.95

GC content: 33.15

Gene sequence:

>1080_bases
ATGCTAGATTTATATGTAAATTGTGATGGAAAAAAATTAAGATGTGGATATACTACAGGTTCCTGTGCAGCTGCAGCGGC
TAAGGCAGCTGCCATAGCTCTTTTTTATAATAAAAAATTAGAAGAAATAAATATAGATACTCCTAAAGGTATAGAACTCG
CCATTCCCATTGAAAAAATAGTAGAAGATGAGAACTTTGTAGAATGTGCAGTTATAAAGGATGGTGGGGATGATGTGGAC
ATAACCCACGGAATAGAAATATGGGCCAGAGCAGAAAAAAAATCTAGTGGATATACTTTAAAAGGTGGAAAAGGTGTTGG
GGTAGTTTGTGGTGAGGGATTATATGTAAAAAAAGGAGAACCAGCAATAAACCCGGTTCCATGTTCCATGATAGAAAAAG
AGGTAAGATCGGTAATGCCAAAGGATTCTGGTGTGGAAATAACTATATTTGTTCCAAAGGGAGAGGAGATAGCTAAAAAA
ACCTTCAATCCAAGATTAAATATTATAGGGGGCATATCCATATTAGGAACAACAGGAATAGTAATGCCTATGTCTGAAGA
TGCTCTAAAAGTCTCCATAGAATTAGAAATAAATCAAAAAACCTGCCATGGTGAAAAAGAATTAATACTTTTATTTGGTA
ACATGGGAGAAAAAATGGCAAAAGAGCTTAATTTAAAGGAAGACAATATGGTTATAATGTCCAACTATGTGGGGTTTGCC
CTCAATTGCTGTATGGCAAGAAAACTAGAGAAAGTAACTATAGTAGGGCATATAGGAAAAATATCTAAAATAGCTTCCGG
TTGTTTTAATACCCATAGTAGAGTATGTGACACTAGGTTAGAAACTTTAGCTTTAGAATTAGCACTTATGGGATATGATA
AGGATTTAGTAACTAAAATATATAATGAAAAAACCACAGAAGGTGCAGTAAATTTATTAGGAGAAGGCTATGAGAAACTC
TATAAAAATTTAGGAGAAAAAATAATAAGAAAAATAGAGCAATACACCTATGATTCTATAAAAGCAGATATTGTAATGTA
TTCTATGGAAAAAGGAATACTATACTCTTCTATAGAATAA

Upstream 100 bases:

>100_bases
GCTAAGATTTGGGCAGAGGAAAAATAAGAATGTAAAATGTTTTTTCGATGAAAAGAAAAAAGCAACTCATAGCATTAACA
AAATGTAATTTGGAGGATTT

Downstream 100 bases:

>100_bases
GTGAGGCTAATACAATTCTTAGATTTTAGCACATATTATTTAATTTAGGAGAGGTTTTATATAAGCTTAAATCATAATCC
TTTAAATAAATATAAAAAAT

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAIALFYNKKLEEINIDTPKGIELAIPIEKIVEDENFVECAVIKDGGDDVD
ITHGIEIWARAEKKSSGYTLKGGKGVGVVCGEGLYVKKGEPAINPVPCSMIEKEVRSVMPKDSGVEITIFVPKGEEIAKK
TFNPRLNIIGGISILGTTGIVMPMSEDALKVSIELEINQKTCHGEKELILLFGNMGEKMAKELNLKEDNMVIMSNYVGFA
LNCCMARKLEKVTIVGHIGKISKIASGCFNTHSRVCDTRLETLALELALMGYDKDLVTKIYNEKTTEGAVNLLGEGYEKL
YKNLGEKIIRKIEQYTYDSIKADIVMYSMEKGILYSSIE

Sequences:

>Translated_359_residues
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAIALFYNKKLEEINIDTPKGIELAIPIEKIVEDENFVECAVIKDGGDDVD
ITHGIEIWARAEKKSSGYTLKGGKGVGVVCGEGLYVKKGEPAINPVPCSMIEKEVRSVMPKDSGVEITIFVPKGEEIAKK
TFNPRLNIIGGISILGTTGIVMPMSEDALKVSIELEINQKTCHGEKELILLFGNMGEKMAKELNLKEDNMVIMSNYVGFA
LNCCMARKLEKVTIVGHIGKISKIASGCFNTHSRVCDTRLETLALELALMGYDKDLVTKIYNEKTTEGAVNLLGEGYEKL
YKNLGEKIIRKIEQYTYDSIKADIVMYSMEKGILYSSIE
>Mature_359_residues
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAIALFYNKKLEEINIDTPKGIELAIPIEKIVEDENFVECAVIKDGGDDVD
ITHGIEIWARAEKKSSGYTLKGGKGVGVVCGEGLYVKKGEPAINPVPCSMIEKEVRSVMPKDSGVEITIFVPKGEEIAKK
TFNPRLNIIGGISILGTTGIVMPMSEDALKVSIELEINQKTCHGEKELILLFGNMGEKMAKELNLKEDNMVIMSNYVGFA
LNCCMARKLEKVTIVGHIGKISKIASGCFNTHSRVCDTRLETLALELALMGYDKDLVTKIYNEKTTEGAVNLLGEGYEKL
YKNLGEKIIRKIEQYTYDSIKADIVMYSMEKGILYSSIE

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_CLOB1 (A7FSI4)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001383311.1
- ProteinModelPortal:   A7FSI4
- SMR:   A7FSI4
- STRING:   A7FSI4
- GeneID:   5395658
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_0977
- eggNOG:   COG1903
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   CBOT441770:CLB_0977-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 39365; Mature: 39365

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAIALFYNKKLEEINIDTPKGIELAIPIEKI
CEEEEEECCCCEEEEECCCCHHHHHHHHHHEEEEEECCCHHEECCCCCCCEEEEECHHHH
VEDENFVECAVIKDGGDDVDITHGIEIWARAEKKSSGYTLKGGKGVGVVCGEGLYVKKGE
CCCCCEEEEEEEECCCCCEEEECCEEEEEEECCCCCCEEEECCCEEEEEECCCEEEECCC
PAINPVPCSMIEKEVRSVMPKDSGVEITIFVPKGEEIAKKTFNPRLNIIGGISILGTTGI
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCEEEEECEEEECCCCE
VMPMSEDALKVSIELEINQKTCHGEKELILLFGNMGEKMAKELNLKEDNMVIMSNYVGFA
EEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEECHHHHH
LNCCMARKLEKVTIVGHIGKISKIASGCFNTHSRVCDTRLETLALELALMGYDKDLVTKI
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH
YNEKTTEGAVNLLGEGYEKLYKNLGEKIIRKIEQYTYDSIKADIVMYSMEKGILYSSIE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCC
>Mature Secondary Structure
MLDLYVNCDGKKLRCGYTTGSCAAAAAKAAAIALFYNKKLEEINIDTPKGIELAIPIEKI
CEEEEEECCCCEEEEECCCCHHHHHHHHHHEEEEEECCCHHEECCCCCCCEEEEECHHHH
VEDENFVECAVIKDGGDDVDITHGIEIWARAEKKSSGYTLKGGKGVGVVCGEGLYVKKGE
CCCCCEEEEEEEECCCCCEEEECCEEEEEEECCCCCCEEEECCCEEEEEECCCEEEECCC
PAINPVPCSMIEKEVRSVMPKDSGVEITIFVPKGEEIAKKTFNPRLNIIGGISILGTTGI
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCEEEEECEEEECCCCE
VMPMSEDALKVSIELEINQKTCHGEKELILLFGNMGEKMAKELNLKEDNMVIMSNYVGFA
EEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEECHHHHH
LNCCMARKLEKVTIVGHIGKISKIASGCFNTHSRVCDTRLETLALELALMGYDKDLVTKI
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH
YNEKTTEGAVNLLGEGYEKLYKNLGEKIIRKIEQYTYDSIKADIVMYSMEKGILYSSIE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA