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The map label for this gene is yjjW [H]

Identifier: 153937401

GI number: 153937401

Start: 3696650

End: 3697486

Strand: Direct

Name: yjjW [H]

Synonym: CLC_3558

Alternate gene names: 153937401

Gene position: 3696650-3697486 (Clockwise)

Preceding gene: 153937481

Following gene: 153934565

Centisome position: 98.3

GC content: 27.84

Gene sequence:

>837_bases
ATGCTTAGAGGATTAGTTAACAAAATAATACCTTTTAGTTCTGTAGATGGTCCTGGAAACAGGACCGCTATATTTTTTCA
GGGATGTAATTTTGATTGTAAATATTGCCATAATCCCGAAACTATAAATACCTGTAAAGCTTGTGGAACCTGTGCCTTTG
TATGTCCTTATGGTGCTGTAGAATTTTTAGGTGATTCTGTAAAATGGGATGAAAATAAGTGTAAAAACTGTGGTCTATGT
CTAGAAAAATGTAAAAATAATTGTGGCCCTAGAAATAAATATATGAGCGTTGGAGAAATTATAAAAGAAATATTAAAAAC
AAAACCTTTTATATCTGGTATAACTGTATCTGGAGGTGAATGTACTCTTCAAAGAGACTTTTTAATAGATCTATTCGAAA
AAATTAAACTTCTAGGTCTTACTATTTTTGTAGATACAAATGGTTCTTTAGACTTTTCTAAAAATCCTAAACTTACAGAA
TTAATGGATATGGCTATGCTTGATGTAAAATCTTTTGATAGTGATGAACATAAAATGCTCACTAAAAAAAATAATGATAT
GGTTCTTAAAAATGTTAGATATTTAGCCAGCATAAATAAACTATACGAAATAAGAACTGTCATAGTTCCAGACCTTTTAG
ATAATGAAAAAAACGTATTTGAAATAAGTAAGCTTATAGCTTCTTTAAACCCTAATATAAGATATAAACTTATAAAATAT
AGATCTATGGGGGTTAGAAAGGAAAAAATAGATTCAAAAATACCAACAGATGAGTACATGGAAAATCTTAAAAACATAGC
ATTAAAAAATGGCTGTAAAAATATAATAATATTATAA

Upstream 100 bases:

>100_bases
AAAAAATTAGATAAAGGCGAGCAAGTTCTTCAAGACACAGTAGCTTTAGGTTTAGGTGCAGTTAAAAATTCTAGAATACT
GGAAAGAAAGGTAAGAGATG

Downstream 100 bases:

>100_bases
CCTTACATAGCACAAATTTATTGACAAACATTCTTTGCTAAAGTAGAATTAAATCAAATTTAGTTCAAATAATTAGAGAA
GTTTTTCTTCTTTAATTATT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDSVKWDENKCKNCGLC
LEKCKNNCGPRNKYMSVGEIIKEILKTKPFISGITVSGGECTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTE
LMDMAMLDVKSFDSDEHKMLTKKNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNVFEISKLIASLNPNIRYKLIKY
RSMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL

Sequences:

>Translated_278_residues
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDSVKWDENKCKNCGLC
LEKCKNNCGPRNKYMSVGEIIKEILKTKPFISGITVSGGECTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTE
LMDMAMLDVKSFDSDEHKMLTKKNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNVFEISKLIASLNPNIRYKLIKY
RSMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL
>Mature_278_residues
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDSVKWDENKCKNCGLC
LEKCKNNCGPRNKYMSVGEIIKEILKTKPFISGITVSGGECTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTE
LMDMAMLDVKSFDSDEHKMLTKKNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNVFEISKLIASLNPNIRYKLIKY
RSMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1790839, Length=277, Percent_Identity=38.2671480144404, Blast_Score=203, Evalue=9e-54,
Organism=Escherichia coli, GI1787130, Length=287, Percent_Identity=28.2229965156794, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790389, Length=282, Percent_Identity=25.886524822695, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI226510931, Length=256, Percent_Identity=24.609375, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011352
- InterPro:   IPR001989
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 31461; Mature: 31461

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS01087 RADICAL_ACTIVATING ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV
CCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHH
EFLGDSVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISGITVSGGE
HHCCCCCCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC
CTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFDSDEHKML
EEEHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
TKKNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNVFEISKLIASLNPNIRYKLIKY
HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEEE
RSMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL
HHCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV
CCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHH
EFLGDSVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISGITVSGGE
HHCCCCCCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC
CTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFDSDEHKML
EEEHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
TKKNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNVFEISKLIASLNPNIRYKLIKY
HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEEE
RSMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL
HHCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]