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The map label for this gene is ydeE [H]

Identifier: 153937237

GI number: 153937237

Start: 2163023

End: 2163907

Strand: Reverse

Name: ydeE [H]

Synonym: CLC_2040

Alternate gene names: 153937237

Gene position: 2163907-2163023 (Counterclockwise)

Preceding gene: 153936432

Following gene: 153935505

Centisome position: 57.54

GC content: 30.17

Gene sequence:

>885_bases
TTGGAAACAATCATGTTACTTAACAATACACTTGAATATATTGAAAGAAATTTGCATACGGCAATTAATATAGATGATAT
ATCAAAAGTTGCATGTTCATCACGATATCACTTTCAGCGTGTTTTTCATTCATTAACAGGATTTACAGTAACTCAGTATA
TAAAAAATCGCAGACTTACCCTTGCCGCAGAGGAGTTGGTTTCAACAGACAGAAGAATAATTGATATAGCATTGAAATAT
GGTTATGAAAGTCCAGAAGCATTTACTAAAGCATTTAAAAGATTACATGGAATATCACCATCAGCTTTAAAAAAGCTTAA
TGGAAAAATTAAAGCTTTTCCCAAAATCTCTTTTCAAATATCTATAAAAGGAGAGTGCGAAATCATTTATAGAATAGTTG
AAAAAGAAGCATTTAAGGTATTTGGTACAGGATTTGAAACAACTAGAATTAATTATGCGGCTTATAAAGAAATACCAGAA
TTTATTAATAAGATTTTTAAAGATGGAACACATGATAGAATTAATGAAGCATTAGGTAATTCTAAAGGTAGTTTATTAGA
TGGATTTCATTATGATTTTAAAGAAAATGGTACAAGAAAATATATGATGGGATATGAAATACCTAGAACAGAGATATCAG
ATGAATTTACAATACTTCAAGTACCTAAGCTTACATGGGCAGTATTTGAAGGATATGGGGCTATGCCAGATAACTTGATT
ATACAGGATATATGGAGACGTATATATTCTGAATGGTTTCCATCCTCTGGATTTGAGCAAGTGGAAGGTCCATGTATTGA
AAAAAATTTTTGGAATAATAAAAAACATGATGAATACAAATGCGAAGTATGGATTCCCGTAAAAACAAAGTCAATCAATT
GGTGA

Upstream 100 bases:

>100_bases
GTATTGTGAAGTTATAACAAATTACATATATAATAAGATGAAATGCGTGTGATTTACGTTCTTATAATGAATGAACTTAT
TTTGAAAGGAGATGAGAAGC

Downstream 100 bases:

>100_bases
CTTCGTTGTTATGTTTACTAACTATCAATAAAATGAGAACAGACCACATCATGGAATGGTATATCCATGATGTGGTTTGT
TTTTTGAAATAAGGCAATGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLTLAAEELVSTDRRIIDIALKY
GYESPEAFTKAFKRLHGISPSALKKLNGKIKAFPKISFQISIKGECEIIYRIVEKEAFKVFGTGFETTRINYAAYKEIPE
FINKIFKDGTHDRINEALGNSKGSLLDGFHYDFKENGTRKYMMGYEIPRTEISDEFTILQVPKLTWAVFEGYGAMPDNLI
IQDIWRRIYSEWFPSSGFEQVEGPCIEKNFWNNKKHDEYKCEVWIPVKTKSINW

Sequences:

>Translated_294_residues
METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLTLAAEELVSTDRRIIDIALKY
GYESPEAFTKAFKRLHGISPSALKKLNGKIKAFPKISFQISIKGECEIIYRIVEKEAFKVFGTGFETTRINYAAYKEIPE
FINKIFKDGTHDRINEALGNSKGSLLDGFHYDFKENGTRKYMMGYEIPRTEISDEFTILQVPKLTWAVFEGYGAMPDNLI
IQDIWRRIYSEWFPSSGFEQVEGPCIEKNFWNNKKHDEYKCEVWIPVKTKSINW
>Mature_294_residues
METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLTLAAEELVSTDRRIIDIALKY
GYESPEAFTKAFKRLHGISPSALKKLNGKIKAFPKISFQISIKGECEIIYRIVEKEAFKVFGTGFETTRINYAAYKEIPE
FINKIFKDGTHDRINEALGNSKGSLLDGFHYDFKENGTRKYMMGYEIPRTEISDEFTILQVPKLTWAVFEGYGAMPDNLI
IQDIWRRIYSEWFPSSGFEQVEGPCIEKNFWNNKKHDEYKCEVWIPVKTKSINW

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=105, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790497, Length=96, Percent_Identity=36.4583333333333, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081928, Length=101, Percent_Identity=30.6930693069307, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34309; Mature: 34309

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLT
CCEEEEHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCE
LAAEELVSTDRRIIDIALKYGYESPEAFTKAFKRLHGISPSALKKLNGKIKAFPKISFQI
EHHHHHHHCCHHHEEHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEECEEEEEEE
SIKGECEIIYRIVEKEAFKVFGTGFETTRINYAAYKEIPEFINKIFKDGTHDRINEALGN
EECCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SKGSLLDGFHYDFKENGTRKYMMGYEIPRTEISDEFTILQVPKLTWAVFEGYGAMPDNLI
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCHHH
IQDIWRRIYSEWFPSSGFEQVEGPCIEKNFWNNKKHDEYKCEVWIPVKTKSINW
HHHHHHHHHHHHCCCCCCHHHCCCEECCCCCCCCCCCCEEEEEEEEEECCCCCC
>Mature Secondary Structure
METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLT
CCEEEEHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCE
LAAEELVSTDRRIIDIALKYGYESPEAFTKAFKRLHGISPSALKKLNGKIKAFPKISFQI
EHHHHHHHCCHHHEEHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEECEEEEEEE
SIKGECEIIYRIVEKEAFKVFGTGFETTRINYAAYKEIPEFINKIFKDGTHDRINEALGN
EECCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SKGSLLDGFHYDFKENGTRKYMMGYEIPRTEISDEFTILQVPKLTWAVFEGYGAMPDNLI
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCHHH
IQDIWRRIYSEWFPSSGFEQVEGPCIEKNFWNNKKHDEYKCEVWIPVKTKSINW
HHHHHHHHHHHHCCCCCCHHHCCCEECCCCCCCCCCCCEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]