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The map label for this gene is rnfC [H]

Identifier: 153937072

GI number: 153937072

Start: 2442832

End: 2443950

Strand: Reverse

Name: rnfC [H]

Synonym: CLC_2315

Alternate gene names: 153937072

Gene position: 2443950-2442832 (Counterclockwise)

Preceding gene: 153937628

Following gene: 153934616

Centisome position: 64.99

GC content: 34.94

Gene sequence:

>1119_bases
ATGGAAAAAATGTTTAGTTTTCCTCTAAGGATGCACGTAGGTGCACCAGATGCTCCCTGTGTAAAAGAGGGACAAAAGGT
TAAAAGAGGAGAATGTATAGCAGAACCAAACGGACTTGGTGCTAAAATTCATACTAGTGTGTCCGGTATAGTAGAAAAAG
TTACAGATAAAGAAATCATCATAAAAGCTGATGAAGCTCAAACAACAGAATTCGTTAAGATAAAAAAATGTGATAATTTA
GTAGATACTGTATTTGAAGCAGGAATAGTTGGAGCCGGCGGAGCAGGTTTTCCAACTCACATAAAACTAAAGGCAGATAA
CAAAGATGGCTATATTATAGCAAACTGTGTAGAATGTGAACCAGCACTTCATCATAACATAAAAGTTATAGAAGAAACAC
CTGAATTAATAATAAATGGTGTTAGATATGCAATGAAAGCTACTAACTCAACAAAAGGATATATAGCTATAAAAGCTAAA
CATCCTGAAGCTATAGCTTCATTAGAAAAAGCTTTAAAGGGTGCTACTGATGTAGAAGTTAAACCTCTTGCTGACTTATA
TCCAATGGGTGAAGAAAGAGCTATAATCAATGCAATATTTGATAAGTGGTTAGATGTAACAGAGCTTCCTATAGAAGCAA
AATCCATTGTAATGAATGCTGAAACTTTAGCAAATATTACAAGAGCCGTAGAAGAAGGAAAGCCAGTTATAGATAAAGAT
ATAACAGTAATAGGAAAGTTAAAATCAGGCAACAAGCCAAATATATTCTTACAAGTACCAGTGGGAACACCAGTAAAAGA
TTTAATAGAAAAATCTGGTGGAATAGATGGTGAATATGGTGAACTAGTAATAGGTGGACCATACACTGGAAAAGCTGGAG
ACATAGAAAAGGATACAGTTACTAAAATATCTGGTGGAGCAATAGTTACAATACCACTACCAGAGTATAATGGACCATTA
GGACTACTAGTATGTGCCTGTGGAGCTAATGAAGAAAGATTAAAAGATGTAGCAACTAAAATGAATGCAAAAGTTGCAGG
AATAGTTGACTGCAAAAACATAGAATACCCAAAGGGTAAAGGAAATGGACCAGGAAAATGTAAAACACCTGGTGAATGA

Upstream 100 bases:

>100_bases
TATTTTGTGTTTTTTTTAACTTTTTTTATTTAAATTATAGATTTGGCATAAACATTGCTATATAATATAAGTGTGTGTAG
ATAGATCAAGGAGGGATACC

Downstream 100 bases:

>100_bases
CCAGGCCAAGCGGCTGCAGTTATGCAGCTTAAAAAAGATGGAGCAGAAAGAATATTAATATCAAACTGTAGTGATTGTTC
AAATACAGTTATGCAAATAG

Product: putative electron transport protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MEKMFSFPLRMHVGAPDAPCVKEGQKVKRGECIAEPNGLGAKIHTSVSGIVEKVTDKEIIIKADEAQTTEFVKIKKCDNL
VDTVFEAGIVGAGGAGFPTHIKLKADNKDGYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNSTKGYIAIKAK
HPEAIASLEKALKGATDVEVKPLADLYPMGEERAIINAIFDKWLDVTELPIEAKSIVMNAETLANITRAVEEGKPVIDKD
ITVIGKLKSGNKPNIFLQVPVGTPVKDLIEKSGGIDGEYGELVIGGPYTGKAGDIEKDTVTKISGGAIVTIPLPEYNGPL
GLLVCACGANEERLKDVATKMNAKVAGIVDCKNIEYPKGKGNGPGKCKTPGE

Sequences:

>Translated_372_residues
MEKMFSFPLRMHVGAPDAPCVKEGQKVKRGECIAEPNGLGAKIHTSVSGIVEKVTDKEIIIKADEAQTTEFVKIKKCDNL
VDTVFEAGIVGAGGAGFPTHIKLKADNKDGYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNSTKGYIAIKAK
HPEAIASLEKALKGATDVEVKPLADLYPMGEERAIINAIFDKWLDVTELPIEAKSIVMNAETLANITRAVEEGKPVIDKD
ITVIGKLKSGNKPNIFLQVPVGTPVKDLIEKSGGIDGEYGELVIGGPYTGKAGDIEKDTVTKISGGAIVTIPLPEYNGPL
GLLVCACGANEERLKDVATKMNAKVAGIVDCKNIEYPKGKGNGPGKCKTPGE
>Mature_372_residues
MEKMFSFPLRMHVGAPDAPCVKEGQKVKRGECIAEPNGLGAKIHTSVSGIVEKVTDKEIIIKADEAQTTEFVKIKKCDNL
VDTVFEAGIVGAGGAGFPTHIKLKADNKDGYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNSTKGYIAIKAK
HPEAIASLEKALKGATDVEVKPLADLYPMGEERAIINAIFDKWLDVTELPIEAKSIVMNAETLANITRAVEEGKPVIDKD
ITVIGKLKSGNKPNIFLQVPVGTPVKDLIEKSGGIDGEYGELVIGGPYTGKAGDIEKDTVTKISGGAIVTIPLPEYNGPL
GLLVCACGANEERLKDVATKMNAKVAGIVDCKNIEYPKGKGNGPGKCKTPGE

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=315, Percent_Identity=24.7619047619048, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788620, Length=236, Percent_Identity=26.271186440678, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 39637; Mature: 39637

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKMFSFPLRMHVGAPDAPCVKEGQKVKRGECIAEPNGLGAKIHTSVSGIVEKVTDKEII
CCCCCCCCEEEECCCCCCCHHHCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHCCCEEE
IKADEAQTTEFVKIKKCDNLVDTVFEAGIVGAGGAGFPTHIKLKADNKDGYIIANCVECE
EEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC
PALHHNIKVIEETPELIINGVRYAMKATNSTKGYIAIKAKHPEAIASLEKALKGATDVEV
HHHHCCEEEEECCHHHHHHHHHHEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEE
KPLADLYPMGEERAIINAIFDKWLDVTELPIEAKSIVMNAETLANITRAVEEGKPVIDKD
CCCHHHCCCCCCHHHHHHHHHHHCCHHCCCCCHHHEEECHHHHHHHHHHHHCCCCCCCCC
ITVIGKLKSGNKPNIFLQVPVGTPVKDLIEKSGGIDGEYGELVIGGPYTGKAGDIEKDTV
EEEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHH
TKISGGAIVTIPLPEYNGPLGLLVCACGANEERLKDVATKMNAKVAGIVDCKNIEYPKGK
EEECCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
GNGPGKCKTPGE
CCCCCCCCCCCC
>Mature Secondary Structure
MEKMFSFPLRMHVGAPDAPCVKEGQKVKRGECIAEPNGLGAKIHTSVSGIVEKVTDKEII
CCCCCCCCEEEECCCCCCCHHHCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHCCCEEE
IKADEAQTTEFVKIKKCDNLVDTVFEAGIVGAGGAGFPTHIKLKADNKDGYIIANCVECE
EEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC
PALHHNIKVIEETPELIINGVRYAMKATNSTKGYIAIKAKHPEAIASLEKALKGATDVEV
HHHHCCEEEEECCHHHHHHHHHHEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEE
KPLADLYPMGEERAIINAIFDKWLDVTELPIEAKSIVMNAETLANITRAVEEGKPVIDKD
CCCHHHCCCCCCHHHHHHHHHHHCCHHCCCCCHHHEEECHHHHHHHHHHHHCCCCCCCCC
ITVIGKLKSGNKPNIFLQVPVGTPVKDLIEKSGGIDGEYGELVIGGPYTGKAGDIEKDTV
EEEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHH
TKISGGAIVTIPLPEYNGPLGLLVCACGANEERLKDVATKMNAKVAGIVDCKNIEYPKGK
EEECCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
GNGPGKCKTPGE
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]