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The map label for this gene is sodB [H]

Identifier: 153936872

GI number: 153936872

Start: 609934

End: 610584

Strand: Reverse

Name: sodB [H]

Synonym: CLC_0594

Alternate gene names: 153936872

Gene position: 610584-609934 (Counterclockwise)

Preceding gene: 153934574

Following gene: 153935245

Centisome position: 16.24

GC content: 28.11

Gene sequence:

>651_bases
ATGATTGTTGCTAAAAAATATCCTTTTGATAATGTAAAAGGAATAAGTTTAAAACAACTAACAGAACATTATAAATTATA
TGATGGTTATGTAAATATGATCAATAAAATTTGGAGTATACCTAACAATTCTAAAGATTTTAAAGATAGTAATGCCACTT
TTAGTAAATTAAGATGCATAAAATTAGGGGAAAGCTATGCTTTAGATGGAGTTAAATTACATGAACTATATTTTCAAAAT
ATGACTTCTGGACATATCCCTATAAATGGACCTATACTAGATAAAATCCTAGAAGATTTTAATTCCGTAGAAAATTTCAC
GGAACTATTTAAAGAAACTGGTAAGTCTATGAGAGGCTGGGTTGTATTAGGTATAGATCCTTTAGATAAAAAACTTCACA
TTTTTGGCTCTGATTCTCACGATAATGGTGCCATATGGCTTGCCTATCCATTGCTTGTAATGGATGTGTATGAGCATGCT
TATTTTATGGATTTTGGAACAGATAAAGGGAAATATATGGATGCCTTTCTTCAAAATGTGAACTGGAATTTAATAAATAA
CAGATTAGGTATGTACTATACCCTAATAAATGCTTTAAAACATAATATACTTTTAAATAACAAAATGAAGCACAGAAATA
TGTTTTATTAA

Upstream 100 bases:

>100_bases
TTATCTTTTAATAAAGTATTCATTTTTTCATTATATAAGTATCAAAATTTTTTTATATAAATATAATAATATTGATAAAA
ATTTTTTAGGAGATATTTAA

Downstream 100 bases:

>100_bases
AATTTATTAAAGCTAAGATAAACAGAGTTCTTGGCTTCAGAGGAAGTTTTTACTCCTCCTGAAGCTTATTAACAGACTCC
TTAGAAGTCGTTATCCTTTA

Product: Fe/Mn family superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MIVAKKYPFDNVKGISLKQLTEHYKLYDGYVNMINKIWSIPNNSKDFKDSNATFSKLRCIKLGESYALDGVKLHELYFQN
MTSGHIPINGPILDKILEDFNSVENFTELFKETGKSMRGWVVLGIDPLDKKLHIFGSDSHDNGAIWLAYPLLVMDVYEHA
YFMDFGTDKGKYMDAFLQNVNWNLINNRLGMYYTLINALKHNILLNNKMKHRNMFY

Sequences:

>Translated_216_residues
MIVAKKYPFDNVKGISLKQLTEHYKLYDGYVNMINKIWSIPNNSKDFKDSNATFSKLRCIKLGESYALDGVKLHELYFQN
MTSGHIPINGPILDKILEDFNSVENFTELFKETGKSMRGWVVLGIDPLDKKLHIFGSDSHDNGAIWLAYPLLVMDVYEHA
YFMDFGTDKGKYMDAFLQNVNWNLINNRLGMYYTLINALKHNILLNNKMKHRNMFY
>Mature_216_residues
MIVAKKYPFDNVKGISLKQLTEHYKLYDGYVNMINKIWSIPNNSKDFKDSNATFSKLRCIKLGESYALDGVKLHELYFQN
MTSGHIPINGPILDKILEDFNSVENFTELFKETGKSMRGWVVLGIDPLDKKLHIFGSDSHDNGAIWLAYPLLVMDVYEHA
YFMDFGTDKGKYMDAFLQNVNWNLINNRLGMYYTLINALKHNILLNNKMKHRNMFY

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

None

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25152; Mature: 25152

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVAKKYPFDNVKGISLKQLTEHYKLYDGYVNMINKIWSIPNNSKDFKDSNATFSKLRCI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEE
KLGESYALDGVKLHELYFQNMTSGHIPINGPILDKILEDFNSVENFTELFKETGKSMRGW
ECCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VVLGIDPLDKKLHIFGSDSHDNGAIWLAYPLLVMDVYEHAYFMDFGTDKGKYMDAFLQNV
EEEEECCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCC
NWNLINNRLGMYYTLINALKHNILLNNKMKHRNMFY
CCEEHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIVAKKYPFDNVKGISLKQLTEHYKLYDGYVNMINKIWSIPNNSKDFKDSNATFSKLRCI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEE
KLGESYALDGVKLHELYFQNMTSGHIPINGPILDKILEDFNSVENFTELFKETGKSMRGW
ECCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VVLGIDPLDKKLHIFGSDSHDNGAIWLAYPLLVMDVYEHAYFMDFGTDKGKYMDAFLQNV
EEEEECCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCC
NWNLINNRLGMYYTLINALKHNILLNNKMKHRNMFY
CCEEHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]