Click here to switch to the map view.

The map label for this gene is licT [H]

Identifier: 153936867

GI number: 153936867

Start: 725969

End: 726808

Strand: Direct

Name: licT [H]

Synonym: CLC_0707

Alternate gene names: 153936867

Gene position: 725969-726808 (Clockwise)

Preceding gene: 153934536

Following gene: 153935429

Centisome position: 19.3

GC content: 22.74

Gene sequence:

>840_bases
ATGGTAATAAACAAGATTTTAAATAATAATGCTGTAATAACATTTGATGATAAAGGAAAAGAAATAATTATAATGGGAAA
AGGAATAGCCTATGGTAAGAGAAAAGGTGATTTTATCGAAGAAAGTAAAATTACCAAGAAATTTATTTTAAGTTCTATGG
AATATTCCAATCATCTTGTTGATATTTTAAGTAGTATTCCTACAGAATATATTGAACTTTGCCATGATATTGTACAATAT
GCAAAACAGAAATTATCTATAGAACTTGATGATTCATTATATATTTCTTTGATGGATCATATAACTACTAGTATTGAACG
ATATAATAAAGGAGTTATACTAAAGAATAAGTTATTATGGGAAATAAAACATTTTTATAAAAATGAATATGAGATTGGAT
TATATGGAATTGATATGATTAAAAAAAATTATGGTTTGACTATGGATGAAGATGAAGCCGGTTTTATAGCACTTCATATT
GTTAGTGCTGAAGTCAGCAATAATATTAAGGATGTATATGAGATAACTGGATTTATACAAAATATCACAAATATTATTAA
ATATTATTTTAATCGTGACTTTAATACAGATTCATATAATTATTATCGGTTTATTACTCATTTAAAATTTTTTGGATATA
GAGTTTTTTCAAAAAAATCTAATAAAAATGATAGTATTAATAATAATCTGTTAGATATTATAAAAGAAGAATATAAGGAA
GCTTATTTATGCAGCTTGAAGATAAAACAATTCATTGAAAAAAAGTATTATTTTTATTTAAATGAAGATGAGATTCTATA
TCTTACAATACATATTGCAAAGCTTATAAGTGATGAATAA

Upstream 100 bases:

>100_bases
AGATATGGATTGTAATAGTGATTAGCTTGCTACACAAAACCTATTTACAGATATTTTGTTATGTCTGGAAATAGGTTTTT
TTGCTTTTGGGGAGGTTTTT

Downstream 100 bases:

>100_bases
ATACAATTTATAGGAGTTTTATAATTAGTGATAATGCTTATGTATTTCACACACTTTCTATATTTTTTTACATAAGAGTT
AGATAATTTTTTAATAAATC

Product: BglG family transcriptional antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDMIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNITNIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDE

Sequences:

>Translated_279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDMIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNITNIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDE
>Mature_279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDMIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNITNIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDE

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=275, Percent_Identity=38.5454545454545, Blast_Score=223, Evalue=1e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32938; Mature: 32938

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLV
CCCHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DILSSIPTEYIELCHDIVQYAKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLW
HHHHHCCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
EIKHFYKNEYEIGLYGIDMIKKNYGLTMDEDEAGFIALHIVSAEVSNNIKDVYEITGFIQ
HHHHHHCCCEEEEEEEHHHHHHCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHH
NITNIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDE
HHHHHHHHHHHHHHHEEEEECCCCEEEEEEEHHHHHCCC
>Mature Secondary Structure
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEESKITKKFILSSMEYSNHLV
CCCHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DILSSIPTEYIELCHDIVQYAKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLW
HHHHHCCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
EIKHFYKNEYEIGLYGIDMIKKNYGLTMDEDEAGFIALHIVSAEVSNNIKDVYEITGFIQ
HHHHHHCCCEEEEEEEHHHHHHCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHH
NITNIIKYYFNRDFNTDSYNYYRFITHLKFFGYRVFSKKSNKNDSINNNLLDIIKEEYKE
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH
AYLCSLKIKQFIEKKYYFYLNEDEILYLTIHIAKLISDE
HHHHHHHHHHHHHHHEEEEECCCCEEEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]