Click here to switch to the map view.

The map label for this gene is pocR [H]

Identifier: 153936808

GI number: 153936808

Start: 784066

End: 784902

Strand: Direct

Name: pocR [H]

Synonym: CLC_0757

Alternate gene names: 153936808

Gene position: 784066-784902 (Clockwise)

Preceding gene: 153936105

Following gene: 153937541

Centisome position: 20.85

GC content: 27.0

Gene sequence:

>837_bases
ATGATAATTAAAAAATCTTTGATAAATAAAAGTATTGAGTATATTTTACAGCATATACATGAGGACATTTCTATTGAGGA
TGTTGCTAATTACTGTAATTTTTCAAAATATTATTTTAGCAGAATGTTTAAAGAGGAAACAGAAGTAAGTATTTATGCTT
TTATCAAACGTATGAGAATGGATCAAAGTTCAGTAAGTCTTAAGGTTGAAAAAGATAAAACTATTACTGATATTGGAGTC
AATTATGGGTACAGTTCTTCAAATTATAGTTCAGCCTTTAGCAAGCAGTATAGTATTTGTCCACTGGAATTTAGAAAGGC
TATAAATTCAACATGTGTTTCTAATCCATTTTGTCCTAGTAAATATAACACCTTTAAATCTTTTGAACATTATAATAAAA
AGATTATTATAGAAAATCTAGCTGATTTTAAGGTAATCTATGAAAGATATATTGGAAATTATATTGATATAGGGGATAAT
TGGTATAGTTTTATGGAACGGTACAAAACCTACATTAAACCAGATACACTTTTGATCGAAAAGTCTTATGATGATCCATC
TATTACTGAATTAGAGAAGTGTATATATGATTTATGCATAACTGTTGGTGAAGATGTAGAGCTAGAAAATGTTACAACAA
TAAAAGGTGGTAAATTTGCAGTTTATCGTTTTAATGGATATATACATGATATTTTTGTGACATTTCAGGGAGTTTTTAAT
ATTTGGCTTCCACGTAGTGGATATAAAATGGATGAAAGATATGGATTAGGCATTTATCATAATATTGATAGAAAAAATAA
TCATGTTACTATGGATTTATGTATTGCTATTAAATAG

Upstream 100 bases:

>100_bases
TTTGATTTTTGATAATATTTTTTATAAATAGAAGTAAAATTATTAAGAAAATGGAATCATTAGTAGCTGTGTAAAAAGTA
TTTAGGAAAGTTGGATTAAA

Downstream 100 bases:

>100_bases
AGCAAGAATTCAGAAGTAAAAAATTAAGATTTCCTTTATTATGAAAATAGTGATAAAACTATCACTAAATAAAATTAGGA
AAAGGGAGATTTTATGTTTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MIIKKSLINKSIEYILQHIHEDISIEDVANYCNFSKYYFSRMFKEETEVSIYAFIKRMRMDQSSVSLKVEKDKTITDIGV
NYGYSSSNYSSAFSKQYSICPLEFRKAINSTCVSNPFCPSKYNTFKSFEHYNKKIIIENLADFKVIYERYIGNYIDIGDN
WYSFMERYKTYIKPDTLLIEKSYDDPSITELEKCIYDLCITVGEDVELENVTTIKGGKFAVYRFNGYIHDIFVTFQGVFN
IWLPRSGYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK

Sequences:

>Translated_278_residues
MIIKKSLINKSIEYILQHIHEDISIEDVANYCNFSKYYFSRMFKEETEVSIYAFIKRMRMDQSSVSLKVEKDKTITDIGV
NYGYSSSNYSSAFSKQYSICPLEFRKAINSTCVSNPFCPSKYNTFKSFEHYNKKIIIENLADFKVIYERYIGNYIDIGDN
WYSFMERYKTYIKPDTLLIEKSYDDPSITELEKCIYDLCITVGEDVELENVTTIKGGKFAVYRFNGYIHDIFVTFQGVFN
IWLPRSGYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK
>Mature_278_residues
MIIKKSLINKSIEYILQHIHEDISIEDVANYCNFSKYYFSRMFKEETEVSIYAFIKRMRMDQSSVSLKVEKDKTITDIGV
NYGYSSSNYSSAFSKQYSICPLEFRKAINSTCVSNPFCPSKYNTFKSFEHYNKKIIIENLADFKVIYERYIGNYIDIGDN
WYSFMERYKTYIKPDTLLIEKSYDDPSITELEKCIYDLCITVGEDVELENVTTIKGGKFAVYRFNGYIHDIFVTFQGVFN
IWLPRSGYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32743; Mature: 32743

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKKSLINKSIEYILQHIHEDISIEDVANYCNFSKYYFSRMFKEETEVSIYAFIKRMRM
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DQSSVSLKVEKDKTITDIGVNYGYSSSNYSSAFSKQYSICPLEFRKAINSTCVSNPFCPS
CCCCEEEEEECCCEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
KYNTFKSFEHYNKKIIIENLADFKVIYERYIGNYIDIGDNWYSFMERYKTYIKPDTLLIE
HHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCEEEEE
KSYDDPSITELEKCIYDLCITVGEDVELENVTTIKGGKFAVYRFNGYIHDIFVTFQGVFN
ECCCCCCHHHHHHHHHHHHHHCCCCCEECCEEEECCCEEEEEEECCEEEEHHHHHHHHHH
IWLPRSGYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK
EEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MIIKKSLINKSIEYILQHIHEDISIEDVANYCNFSKYYFSRMFKEETEVSIYAFIKRMRM
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DQSSVSLKVEKDKTITDIGVNYGYSSSNYSSAFSKQYSICPLEFRKAINSTCVSNPFCPS
CCCCEEEEEECCCEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
KYNTFKSFEHYNKKIIIENLADFKVIYERYIGNYIDIGDNWYSFMERYKTYIKPDTLLIE
HHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCEEEEE
KSYDDPSITELEKCIYDLCITVGEDVELENVTTIKGGKFAVYRFNGYIHDIFVTFQGVFN
ECCCCCCHHHHHHHHHHHHHHCCCCCEECCEEEECCCEEEEEEECCEEEEHHHHHHHHHH
IWLPRSGYKMDERYGLGIYHNIDRKNNHVTMDLCIAIK
EEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]