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The map label for this gene is gerBA [H]

Identifier: 153936618

GI number: 153936618

Start: 152496

End: 154016

Strand: Direct

Name: gerBA [H]

Synonym: CLC_0171

Alternate gene names: 153936618

Gene position: 152496-154016 (Clockwise)

Preceding gene: 153935672

Following gene: 153937566

Centisome position: 4.06

GC content: 30.31

Gene sequence:

>1521_bases
ATGAAGGAAGTAGTTAATGATGAAATAAGTAAAAGTATAGATGAAAATATAAAATATATAAAAGAATTACTGGAAGGTAA
TTCTGATATGGTTTTTAGGGAATTTTTAATAGGAGATAAGAAAGCTTTTATAATGTACATAGATGGTATGGCAGACAAAG
ATTTATTGAATGACTATGTTTTAGAATCTCTTATGTTGGAATCAGAAAAATTAGGTAATATAAGTGATATCAAAAATAGA
ATTTCAAATAAAAGATATGAGTCTAATGATAAATGTAATGTAAATGATATCAAAAATAAGATATTAACGGTAACAGATGT
ATCAGAGAAAGACAAATTAAGTAAAGCCATAGACCTAGTATTATCAGGAGATACTCTATTGTTAATAGAAGGAATGGATA
AGGCTTATGTAATAGCTACAAGACTTTGGCCTGTTAGGGGGGTTGGGGAACCGGAGTCAGAAACAACAATAAAAGGAAGT
AGAGATGGGTTTACAGAAACTATAAGATTTAATACTGCATTGGTTAGAAGAAGAATAAAAGATACGAGGTTGAAGATAAA
ATCTAAAACGTTAGGAGTAAGATCTAAAACAGATATGGCCATTATATATATAGAAGATATTGTAAACCAGGATGTTTTAA
ATAATATATATGATAGATTAGAAAAAATAGATATTGATGCCATATTGGGAAGCGGATATATAGAACATCTTATAGAAGAT
GGTAAATGGTCTCTTTTCCCAACTACTAGAAGTACAGAGAGGCCAGACGTAGTAGCTTCAGCTTTATATGAAGGCAAAGT
AGCTATTTTAGTTGATAATTCGCCTTTTGCCATTATAGTTCCTACTACCTTACCAAGTTTGTTTCAGTCTCCAGATGATT
ACTACGAAAAATGGATACATTCGTCAATAATAAGAATAATAAGATTATTTTCAATAATTATTAGTATTATATTGCCCTCT
ATGTATGTAGCTGTAACTTCGTATCATAGCGATATAATACCAACTAAGTTAGCTTATTTTATAGCTGCATCTAGAGAAGG
GGTGCCTTTCCCAGCCTATATGGAGGCACTAATAATGGAGTTTAGCTTAGCATTTTTAATGGAATCTATAATTAGATTAC
CGAAACCCATAGGGGCTACTATAGGTATTGTGGGGGGGCTAATAATAGGTCAGGCAGCTGTATCAGCAGGTATTGTAAGC
CCCATAATGATTATAATTGTTTCTATAACCACTATAACAAGTTTCACAGCCCCAAGTTATGATGCAAGTCTTTCTTTTAG
AATAATTAGATTTTTATTAATTATAGCAGCATCATTTTTAGGATTATATGGGATAATTTTAGGATTGATAGTATTGTTAA
TACATTTAGTAAGATTAAAAAGTTTTGGTATACCTTATTTATCACCTATGGTTAATCCAAGTATCAGTGATTTCAAAGAT
ATGTATATAAGAGCACCTATAAGATTTTTTAAGAAAAGACCAGATTACATGAAAACTAGAGATAAAATAAGACAAAGATA
A

Upstream 100 bases:

>100_bases
TAAGTTTAATATTATATATTCTGCAAAGAATATTGTTTTAAAATAGTATATTTCTTAAAATGTAGTATTTTTTAGGTTAG
TTCTAAAGGGAGTGTATAAG

Downstream 100 bases:

>100_bases
AGTAGATTTGGAGGAATTAATGGTGAGGGATGAGAACTTTGTAACATCTTATAGTTTGTTTGCTACTATTGTAACTAGTG
TTATTGGAGTAAGTGTATTT

Product: spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYVLESLMLESEKLGNISDIKNR
ISNKRYESNDKCNVNDIKNKILTVTDVSEKDKLSKAIDLVLSGDTLLLIEGMDKAYVIATRLWPVRGVGEPESETTIKGS
RDGFTETIRFNTALVRRRIKDTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIHSSIIRIIRLFSIIISIILPS
MYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIMEFSLAFLMESIIRLPKPIGATIGIVGGLIIGQAAVSAGIVS
PIMIIIVSITTITSFTAPSYDASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPMVNPSISDFKD
MYIRAPIRFFKKRPDYMKTRDKIRQR

Sequences:

>Translated_506_residues
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYVLESLMLESEKLGNISDIKNR
ISNKRYESNDKCNVNDIKNKILTVTDVSEKDKLSKAIDLVLSGDTLLLIEGMDKAYVIATRLWPVRGVGEPESETTIKGS
RDGFTETIRFNTALVRRRIKDTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIHSSIIRIIRLFSIIISIILPS
MYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIMEFSLAFLMESIIRLPKPIGATIGIVGGLIIGQAAVSAGIVS
PIMIIIVSITTITSFTAPSYDASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPMVNPSISDFKD
MYIRAPIRFFKKRPDYMKTRDKIRQR
>Mature_506_residues
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYVLESLMLESEKLGNISDIKNR
ISNKRYESNDKCNVNDIKNKILTVTDVSEKDKLSKAIDLVLSGDTLLLIEGMDKAYVIATRLWPVRGVGEPESETTIKGS
RDGFTETIRFNTALVRRRIKDTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIHSSIIRIIRLFSIIISIILPS
MYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIMEFSLAFLMESIIRLPKPIGATIGIVGGLIIGQAAVSAGIVS
PIMIIIVSITTITSFTAPSYDASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPMVNPSISDFKD
MYIRAPIRFFKKRPDYMKTRDKIRQR

Specific function: Involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AGFK). Cannot stimulate germination in the absence of gerD and gerK gene products (fructose and glucose receptors respectively) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 57029; Mature: 57029

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LESLMLESEKLGNISDIKNRISNKRYESNDKCNVNDIKNKILTVTDVSEKDKLSKAIDLV
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHE
LSGDTLLLIEGMDKAYVIATRLWPVRGVGEPESETTIKGSRDGFTETIRFNTALVRRRIK
ECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
DTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
HHHHEEHHHHCCCCCCCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIH
CCEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHHHH
SSIIRIIRLFSIIISIILPSMYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FSLAFLMESIIRLPKPIGATIGIVGGLIIGQAAVSAGIVSPIMIIIVSITTITSFTAPSY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPMVNPSISDFKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHH
MYIRAPIRFFKKRPDYMKTRDKIRQR
HHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LESLMLESEKLGNISDIKNRISNKRYESNDKCNVNDIKNKILTVTDVSEKDKLSKAIDLV
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHE
LSGDTLLLIEGMDKAYVIATRLWPVRGVGEPESETTIKGSRDGFTETIRFNTALVRRRIK
ECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
DTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
HHHHEEHHHHCCCCCCCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIH
CCEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHHHH
SSIIRIIRLFSIIISIILPSMYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FSLAFLMESIIRLPKPIGATIGIVGGLIIGQAAVSAGIVSPIMIIIVSITTITSFTAPSY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPMVNPSISDFKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHH
MYIRAPIRFFKKRPDYMKTRDKIRQR
HHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8012571; 9384377 [H]