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The map label for this gene is ydfL [H]

Identifier: 153936513

GI number: 153936513

Start: 1092283

End: 1093104

Strand: Direct

Name: ydfL [H]

Synonym: CLC_1070

Alternate gene names: 153936513

Gene position: 1092283-1093104 (Clockwise)

Preceding gene: 153934814

Following gene: 153935620

Centisome position: 29.05

GC content: 23.6

Gene sequence:

>822_bases
ATGAAAGATTTATTTACAATTGGAGAAATATCAAAATTATTTAATATTAATATAAGGACATTAAGATATTATGATAAAAT
TGACTTATTTAAGCCAATATTTATAGATAAAGCTAATAGTTATAGATATTATTCAACAGATCAATTTGAACAATTAAATA
CAATAAAGTATTTAAAAGCCCTTGGGATGTCATTAGACACAATAAGTTATCATTTAAAGAAACGTAGTGTTGATAATATT
ATTGAGTTATTTGAAAAACAGAAAAAAATTACGGAAGAAAAGATAAAAGAACTAGAACTTACAAAGCAAAAAATTCAAAA
TAGAATAAATCAAATTAACTACGCAAGACAATATCATAATTTGGATGTAGTTCAAGAGATTAGACTTCAAGAGAGAAGGA
TTGTTTTATTAAAAGAAAAAATAAAATCAAACAATGATTTGGAATTATCCATTAGACATTTAGAAAATAAGGCTAATAAA
AATGCTTCTATTTTTAATGGAAAAATAGGAGTATCAATTTCTATAGATAAATTGAAGAATAAAGAATTTGGTGAATATGA
TTCTATTTTTTTATTCACAGAGGGAGAAAGATATAACAAAAATCTGATAAAAGTGTTGCCAGAAGGGACTTATGCTAGTA
TTCGCTTTACTGGAACTCACAAAAATTCTCCAATATATTATGATGAGCTTTTAAAATACATTGAAGAAAAAGGATACACA
ATTATTGATGATTCAATAGAAATAACACTAATTGATTTTGGGTTAACTACTGAAAAATCAGAATTTGTAACTGAAATTCA
AATATTAATAAATAAATCTTGA

Upstream 100 bases:

>100_bases
AAAAATATTAAATTAACTAAATGAATTTGATATAATCTAAATATGCATAAATCATCTATTAATATAAAATTTATTTTTTT
ATAATTAGGAGATAAACTAA

Downstream 100 bases:

>100_bases
CACTCTAGTAACTAGAGACTTTATAATTTATAAAATAGATAAATTGTTAATCTATAATAACAATAGTGAAATCCATTTAA
TTATTATACTTAGTGTTTTA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKDLFTIGEISKLFNINIRTLRYYDKIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKALGMSLDTISYHLKKRSVDNI
IELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHNLDVVQEIRLQERRIVLLKEKIKSNNDLELSIRHLENKANK
NASIFNGKIGVSISIDKLKNKEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS

Sequences:

>Translated_273_residues
MKDLFTIGEISKLFNINIRTLRYYDKIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKALGMSLDTISYHLKKRSVDNI
IELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHNLDVVQEIRLQERRIVLLKEKIKSNNDLELSIRHLENKANK
NASIFNGKIGVSISIDKLKNKEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS
>Mature_273_residues
MKDLFTIGEISKLFNINIRTLRYYDKIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKALGMSLDTISYHLKKRSVDNI
IELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHNLDVVQEIRLQERRIVLLKEKIKSNNDLELSIRHLENKANK
NASIFNGKIGVSISIDKLKNKEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS

Specific function: Zinc-Responsive Transcriptional Regulator Of Znta. [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32283; Mature: 32283

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLFTIGEISKLFNINIRTLRYYDKIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKA
CCCCHHHHHHHHHHCCEEEEEEEECHHCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHH
LGMSLDTISYHLKKRSVDNIIELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHN
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDVVQEIRLQERRIVLLKEKIKSNNDLELSIRHLENKANKNASIFNGKIGVSISIDKLKN
HHHHHHHHHHHHHEEEEHHHHCCCCCEEEEEEHHHHCCCCCCEEEECEEEEEEEHHHCCC
KEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
CCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEHHHHHHHHHHCCCE
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS
EEECCEEEEEEEECCCCCHHHHHEEEEEEEECC
>Mature Secondary Structure
MKDLFTIGEISKLFNINIRTLRYYDKIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKA
CCCCHHHHHHHHHHCCEEEEEEEECHHCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHH
LGMSLDTISYHLKKRSVDNIIELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHN
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDVVQEIRLQERRIVLLKEKIKSNNDLELSIRHLENKANKNASIFNGKIGVSISIDKLKN
HHHHHHHHHHHHHEEEEHHHHCCCCCEEEEEEHHHHCCCCCCEEEECEEEEEEEHHHCCC
KEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
CCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEHHHHHHHHHHCCCE
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS
EEECCEEEEEEEECCCCCHHHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]