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The map label for this gene is yhcS [H]

Identifier: 153936444

GI number: 153936444

Start: 2199741

End: 2200379

Strand: Reverse

Name: yhcS [H]

Synonym: CLC_2076

Alternate gene names: 153936444

Gene position: 2200379-2199741 (Counterclockwise)

Preceding gene: 153937410

Following gene: 153935849

Centisome position: 58.51

GC content: 32.39

Gene sequence:

>639_bases
TTGTATTTAAAAAGCGTCATAAACATGAGTAAATTTAAGTTATCATTTAAAAAGTTATCATTAGTAAAAATCTTAAGTCT
AGGAACTATAGTACTAGGCTTAGGATGTATTTCTTGGTCATTAATTAATATATGGTCACAGCCAAAGAATTCTTACAATG
AAGCCACTGATAATGTAGAATATTTATCTGAATTAGACTCTTACGATAAAAGTACAGTTATTTATGATGTGAATCCTGAA
AAGGGAGATAACTTTGGAAGTCTTATAATGCCAACTCTAAAGCAAAAGTTTCCCATTATACAGGGAACTGATGATAAGGA
GTTGAAAAAAGGTGTAGGCCACTTTCTTGAAAGTGCACTACCTGGCGAAGAAGATAACTGTGTGCTTTCAGGACATCGAG
ATACTGTATTTAGTCAAATAGGTAAACTCAAAATAGGAGATCCATTGATTGTGCAAACGTCAGCTGGAATATTTACTTAT
AGGGTGAGTGAAACTCGAATAGTTAAGAAAGATGATAAAACGGTAATTGTGCCTTCAGATAATGCGAAACTTACTATGAC
CACTTGTTATCCATTTTATTTTATTGGATATGCTCCAGAGCGTTATATAGTTTTCGCAAACTTAGTGAAGAATAAATAA

Upstream 100 bases:

>100_bases
GTAACTACAGCTGGAAAATGGAAACTTCCAAATACTGCTACACATGCATACGGAATATTACTAGCAGGTTCTGTATTAGC
ACTACTAGGTGCATGTGGAT

Downstream 100 bases:

>100_bases
AACAGCATCTTAGGATGCTGTTTTTTCTTATGGATAAGTTTAGAAGAATTTATAGTGAACCGGTGGAGCTGAGCTAGGTT
ATGTAATTTAAATGGTGGAA

Product: sortase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MYLKSVINMSKFKLSFKKLSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVEYLSELDSYDKSTVIYDVNPE
KGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESALPGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTY
RVSETRIVKKDDKTVIVPSDNAKLTMTTCYPFYFIGYAPERYIVFANLVKNK

Sequences:

>Translated_212_residues
MYLKSVINMSKFKLSFKKLSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVEYLSELDSYDKSTVIYDVNPE
KGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESALPGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTY
RVSETRIVKKDDKTVIVPSDNAKLTMTTCYPFYFIGYAPERYIVFANLVKNK
>Mature_212_residues
MYLKSVINMSKFKLSFKKLSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVEYLSELDSYDKSTVIYDVNPE
KGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESALPGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTY
RVSETRIVKKDDKTVIVPSDNAKLTMTTCYPFYFIGYAPERYIVFANLVKNK

Specific function: Unknown

COG id: COG3764

COG function: function code M; Sortase (surface protein transpeptidase)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005754 [H]

Pfam domain/function: PF04203 Sortase [H]

EC number: NA

Molecular weight: Translated: 23798; Mature: 23798

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKSVINMSKFKLSFKKLSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVE
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YLSELDSYDKSTVIYDVNPEKGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESAL
HHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHC
PGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTYRVSETRIVKKDDKTVIVPSD
CCCCCCEEEECCCHHHHHHHCCEECCCCEEEEECCCEEEEEECCEEEEECCCCEEEEECC
NAKLTMTTCYPFYFIGYAPERYIVFANLVKNK
CCEEEEEEECEEEEEEECCCEEEEEEEECCCC
>Mature Secondary Structure
MYLKSVINMSKFKLSFKKLSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVE
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YLSELDSYDKSTVIYDVNPEKGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESAL
HHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHC
PGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTYRVSETRIVKKDDKTVIVPSD
CCCCCCEEEECCCHHHHHHHCCEECCCCEEEEECCCEEEEEECCEEEEECCCCEEEEECC
NAKLTMTTCYPFYFIGYAPERYIVFANLVKNK
CCEEEEEEECEEEEEEECCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]