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The map label for this gene is rpiR [C]

Identifier: 153936409

GI number: 153936409

Start: 329700

End: 330461

Strand: Direct

Name: rpiR [C]

Synonym: CLC_0346

Alternate gene names: 153936409

Gene position: 329700-330461 (Clockwise)

Preceding gene: 153935039

Following gene: 153937413

Centisome position: 8.77

GC content: 24.02

Gene sequence:

>762_bases
ATGGATATATCCAAGTTTATTCAAAATAAAGGGCTTACAGAAATAGAAATAGAAGTTCTTAATTATATGATAGATAATAT
TAATGATATAAATAAAATGGGAGTAAGAGGAGTAGCAAAAAATAATTTTACATCAACATCTACTATTATGAGATTAGCTA
AAAAACTTGGTTATTCTGGTTTTTTAGAAATGCAATACAATTTATTATCTTTAACTAAAAATGAATTAAAAGATAATTTA
AATGATAGTAGCTTCATAGAAAGTCTAAATATGGATAGCCTATTAGAAGAAAATAGTACAGAAGCAATTAATAATTTTAT
AGATATTTTATTTAATGACGATCATAAGTTTATTTTTATATATGCCAATGGTTTTTCTGGTATTGTGGCAGAATATATAA
ATAAGAAACTTCTAGTTATGGGTAAGAGGTGTATTTTGTCTAATGGAACAGATTCTATAGGAGTATTTGAAAATAATTTA
GATTTTATAAGTGCTATTATAGTAATATCTAAATCTGGAGAAACACCAATGGTATTAAATAAGGTTAAAACAGCAAAGGA
ACATAATATTAAGGTTATATCTTTTACAAATGAGCGGGAAAATAGCATAAGTAAGCTTTCTGATATAAGATTTAAGATTA
AAGATACCAATAAATTAGATGATAGAAATTTAATGCCAAACACATTTTTCCCAAAGGTACTAGTGTTAATAGAGTTATTA
GTATATGAATATTATAAAAAGAAAAATAGTAATGTTGAGTAA

Upstream 100 bases:

>100_bases
ATAAATAAAGAACTTAAGATTTATAGAGTTATATAAAAGGCTAGTAAAGTTTCTATCTAGTTACTGTATAATTTGGTAAA
TAATTTATGGAGGCAATGGA

Downstream 100 bases:

>100_bases
CGTGTTATCTAAAGAGGTAACACGTTTTTTACATAAGAAAATCTATATACATATAGATATCTAATTATTATAATGTGAAA
TGTAAATGGTTTCTCAAAAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: RpiR Family Transcriptional Regulator; Transcriptional Regulator RpiR Family; Sugar Isomerase; HTH-Type Transcriptional Regulator; SIS Domain Protein; RpiR-Family Transcriptional Regulator; RpiR Family Regulatory Protein; SIS Domain-Containing Protein

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSGFLEMQYNLLSLTKNELKDNL
NDSSFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFIYANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNL
DFISAIIVISKSGETPMVLNKVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
VYEYYKKKNSNVE

Sequences:

>Translated_253_residues
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSGFLEMQYNLLSLTKNELKDNL
NDSSFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFIYANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNL
DFISAIIVISKSGETPMVLNKVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
VYEYYKKKNSNVE
>Mature_253_residues
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSGFLEMQYNLLSLTKNELKDNL
NDSSFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFIYANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNL
DFISAIIVISKSGETPMVLNKVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
VYEYYKKKNSNVE

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28918; Mature: 28918

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSG
CCHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
FLEMQYNLLSLTKNELKDNLNDSSFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFI
EEHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHEECCCCCEEEE
YANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNLDFISAIIVISKSGETPMVLN
EECCCHHHHHHHHCCCEEECCCHHEECCCCCCCEEEECCHHHEEEEEEEECCCCCCHHHH
KVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
HHHHHHHCCEEEEEECCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
VYEYYKKKNSNVE
HHHHHHHCCCCCC
>Mature Secondary Structure
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSG
CCHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
FLEMQYNLLSLTKNELKDNLNDSSFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFI
EEHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHEECCCCCEEEE
YANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNLDFISAIIVISKSGETPMVLN
EECCCHHHHHHHHCCCEEECCCHHEECCCCCCCEEEECCHHHEEEEEEEECCCCCCHHHH
KVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
HHHHHHHCCEEEEEECCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
VYEYYKKKNSNVE
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA