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The map label for this gene is ydeM [C]

Identifier: 153936383

GI number: 153936383

Start: 500630

End: 502798

Strand: Direct

Name: ydeM [C]

Synonym: CLC_0497

Alternate gene names: 153936383

Gene position: 500630-502798 (Clockwise)

Preceding gene: 153936482

Following gene: 153937180

Centisome position: 13.31

GC content: 26.6

Gene sequence:

>2169_bases
ATGGAAAATAGACAAAGAAAAAAATATAAGTTGGGTAGCGGCATGTCAAACTGGAAAGGTGGACAGTCATATGAAGTTAC
GTTTATTGTTACAGAAGATTGTAATTTAAGATGTAAATATTGCTATCAAGTGAAAAAAAATAATAGAAATGTTATGTCTT
TTGATATTGCAAAAAAAGCGGTTGATTATGTTCTAAATAATGAAAGTCTATACAATTTTGATGCTGTAATATGGAATTTT
ATAGGGGGTGAACCATTTTTAGAGATAGATTTAATTGATAAAATAACTGATTATATAAAGATTCAAACTTATATAAAAAA
ACATAAATGGTTCTCAATGCATAGATTTTGTTTCTCAAGCAATGGTATTTTATATGGAACAGAAGAAGTTCAAAAATATA
TAAAGAAAAACCAAGGTAAATGTTCTATAGGTATTTCAATAGATGGAACCAAACAAAAACATGATTTGCAAAGGGTATAT
CCTGATGGAAGAGGCTCATATGATGATGTTATAAAGAACATTCCGCTATGGATAAGTCAAAATCCAGGTGCTTCAACTAA
AGTAACAATTGGTCATGATGACTTACCTTACGTAAAAGATAGTATAATTCATCTTTGGAATTTAGGAATTAGCACAGTAC
CTGCTAATGTAGTTTTTGAAGATGTGTGGAAAAAAGGCGATGATATTTTATTTGAAAATCAGTTGAAAGAATTGGCTGAT
TACATAATAGATAATAAGCTATGGAACAAATTTGAATGCACGCTTTTTGGTGATTCTATGGGATATGCTAATAGTGAAGA
AAGTTTGAATCAAAATCATTGCGGTGCAGGGAAAATGCTAGCTATTGATCCTAAAGGAAATTTATTACCATGTCTACGAT
ATGCTGATTATTCTTTGGAAAATAAACAAAGTTATATAATAGGTAATGTGAATGATGGCATAGATTTCGATAAGTTAAGA
GGATTTTTTTGTTTAAATACTAAAGTACAAAGTGATTTAGAGTGTATAGAGTGTGAAGTTGCAACAGGATGTGCTTGGTG
TCAGGCAAACAATTATGATAACTCAGTTTTAGGAAGTAATTTCGAAAGGTGTAAATATATTTGTGATATGCATAAGGCAC
AATGTAGAGCTAATAATTATTATTGGGGAAGATTAGAAGATGAATTTGGTATACATAGAGAATCATATGGAATTCAAAAG
AAACATTTATATATGATGGTTTCTGACAGTATTGAGGAACACTGTAATTATATTAGTAGTTCTCAAAGTAACGAAATTAT
GAGTCAGAAAACTTTATATGATGGGTATAAATTTGCGTATAATAATTTTTTTAAGCCAATTATAATGCATTCAAAAAATC
TCGATATAGAAAAAAATTTGAATTTTAGATTTCCTTTAGAAAAAATTAATATATATGGGACAAATTATAATAATGAAATT
AATTTTGATATTGAAAAAGATATACAAGTTATTACACAGTCAGATATTAATAAATGTTCAAATTTAACAAATATTATTTT
TGTTGTGGAAGAGAATGATTTACAAAACTTAGCTTCAAATATAAGTATCCTATTAGAAAATGTAGATAGAATAAATCTTA
ATATAAAGTCCTCTAATAAATTTAATTTAACTATGTATAAAGAACAGCTAAATAGTATAGTAGATATATTATTAGAGTAT
TTTAAAAAAGGAATTATAAAAGAAATTAATGTAATTACAGATACACTTTATATTAAAAAAATGGATAACTGTGAGTTTGG
AGAAAATAATTTTGCATTAGGGCCAAATGGGAAGATATATATATGTCCTGCATTTTATTTTGAGGATAAAAATAGTTTTA
TTGGATCATTAGAAGAAGGTATAAATTTAAAAGATGAAAACTTATTTAAATTTAAAAATGCACCAATTTGCAAAAACTGT
GATAACTATCAATGCAATAGATGTGTATTCTTTAATAGAAAATATACAAATGAATTTAACATTCCTTCATCTTTACAATG
TAGAATTAGTTCAATTGAAAGAAATGCATCAATTTTGTTTAGAGAAAAGGCACTTAAAAAAAATATTAATATTGGAACCG
TTAGAGAGCTTAATAGGTTACCTTATGAAGACCCTATTGCAGTTATTATGAAAAATGATTTAAATCCATACAAATTAAAG
AGTGAGTAA

Upstream 100 bases:

>100_bases
TAACAGGGAGTTTAAATTCATTAATCAATAATTATGTAATTCTACAATGAAGTAGGAAAATTAAGTATAATATCAACAAT
TATTGTTAGGAAGTGAGAAA

Downstream 100 bases:

>100_bases
AGGATGTGCATATGATGGAAGTTGAAAATTTAGATAATTTAATCATTACAGAATCAGAAAGGAATAAACTTGAGGAAATA
ATTGAAAAAATAGCATCACT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
MENRQRKKYKLGSGMSNWKGGQSYEVTFIVTEDCNLRCKYCYQVKKNNRNVMSFDIAKKAVDYVLNNESLYNFDAVIWNF
IGGEPFLEIDLIDKITDYIKIQTYIKKHKWFSMHRFCFSSNGILYGTEEVQKYIKKNQGKCSIGISIDGTKQKHDLQRVY
PDGRGSYDDVIKNIPLWISQNPGASTKVTIGHDDLPYVKDSIIHLWNLGISTVPANVVFEDVWKKGDDILFENQLKELAD
YIIDNKLWNKFECTLFGDSMGYANSEESLNQNHCGAGKMLAIDPKGNLLPCLRYADYSLENKQSYIIGNVNDGIDFDKLR
GFFCLNTKVQSDLECIECEVATGCAWCQANNYDNSVLGSNFERCKYICDMHKAQCRANNYYWGRLEDEFGIHRESYGIQK
KHLYMMVSDSIEEHCNYISSSQSNEIMSQKTLYDGYKFAYNNFFKPIIMHSKNLDIEKNLNFRFPLEKINIYGTNYNNEI
NFDIEKDIQVITQSDINKCSNLTNIIFVVEENDLQNLASNISILLENVDRINLNIKSSNKFNLTMYKEQLNSIVDILLEY
FKKGIIKEINVITDTLYIKKMDNCEFGENNFALGPNGKIYICPAFYFEDKNSFIGSLEEGINLKDENLFKFKNAPICKNC
DNYQCNRCVFFNRKYTNEFNIPSSLQCRISSIERNASILFREKALKKNINIGTVRELNRLPYEDPIAVIMKNDLNPYKLK
SE

Sequences:

>Translated_722_residues
MENRQRKKYKLGSGMSNWKGGQSYEVTFIVTEDCNLRCKYCYQVKKNNRNVMSFDIAKKAVDYVLNNESLYNFDAVIWNF
IGGEPFLEIDLIDKITDYIKIQTYIKKHKWFSMHRFCFSSNGILYGTEEVQKYIKKNQGKCSIGISIDGTKQKHDLQRVY
PDGRGSYDDVIKNIPLWISQNPGASTKVTIGHDDLPYVKDSIIHLWNLGISTVPANVVFEDVWKKGDDILFENQLKELAD
YIIDNKLWNKFECTLFGDSMGYANSEESLNQNHCGAGKMLAIDPKGNLLPCLRYADYSLENKQSYIIGNVNDGIDFDKLR
GFFCLNTKVQSDLECIECEVATGCAWCQANNYDNSVLGSNFERCKYICDMHKAQCRANNYYWGRLEDEFGIHRESYGIQK
KHLYMMVSDSIEEHCNYISSSQSNEIMSQKTLYDGYKFAYNNFFKPIIMHSKNLDIEKNLNFRFPLEKINIYGTNYNNEI
NFDIEKDIQVITQSDINKCSNLTNIIFVVEENDLQNLASNISILLENVDRINLNIKSSNKFNLTMYKEQLNSIVDILLEY
FKKGIIKEINVITDTLYIKKMDNCEFGENNFALGPNGKIYICPAFYFEDKNSFIGSLEEGINLKDENLFKFKNAPICKNC
DNYQCNRCVFFNRKYTNEFNIPSSLQCRISSIERNASILFREKALKKNINIGTVRELNRLPYEDPIAVIMKNDLNPYKLK
SE
>Mature_722_residues
MENRQRKKYKLGSGMSNWKGGQSYEVTFIVTEDCNLRCKYCYQVKKNNRNVMSFDIAKKAVDYVLNNESLYNFDAVIWNF
IGGEPFLEIDLIDKITDYIKIQTYIKKHKWFSMHRFCFSSNGILYGTEEVQKYIKKNQGKCSIGISIDGTKQKHDLQRVY
PDGRGSYDDVIKNIPLWISQNPGASTKVTIGHDDLPYVKDSIIHLWNLGISTVPANVVFEDVWKKGDDILFENQLKELAD
YIIDNKLWNKFECTLFGDSMGYANSEESLNQNHCGAGKMLAIDPKGNLLPCLRYADYSLENKQSYIIGNVNDGIDFDKLR
GFFCLNTKVQSDLECIECEVATGCAWCQANNYDNSVLGSNFERCKYICDMHKAQCRANNYYWGRLEDEFGIHRESYGIQK
KHLYMMVSDSIEEHCNYISSSQSNEIMSQKTLYDGYKFAYNNFFKPIIMHSKNLDIEKNLNFRFPLEKINIYGTNYNNEI
NFDIEKDIQVITQSDINKCSNLTNIIFVVEENDLQNLASNISILLENVDRINLNIKSSNKFNLTMYKEQLNSIVDILLEY
FKKGIIKEINVITDTLYIKKMDNCEFGENNFALGPNGKIYICPAFYFEDKNSFIGSLEEGINLKDENLFKFKNAPICKNC
DNYQCNRCVFFNRKYTNEFNIPSSLQCRISSIERNASILFREKALKKNINIGTVRELNRLPYEDPIAVIMKNDLNPYKLK
SE

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 83733; Mature: 83733

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRQRKKYKLGSGMSNWKGGQSYEVTFIVTEDCNLRCKYCYQVKKNNRNVMSFDIAKKA
CCCCCCHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEHHHHHH
VDYVLNNESLYNFDAVIWNFIGGEPFLEIDLIDKITDYIKIQTYIKKHKWFSMHRFCFSS
HHHHCCCCCEEEHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NGILYGTEEVQKYIKKNQGKCSIGISIDGTKQKHDLQRVYPDGRGSYDDVIKNIPLWISQ
CCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHCCCCEEEEC
NPGASTKVTIGHDDLPYVKDSIIHLWNLGISTVPANVVFEDVWKKGDDILFENQLKELAD
CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHH
YIIDNKLWNKFECTLFGDSMGYANSEESLNQNHCGAGKMLAIDPKGNLLPCLRYADYSLE
HHHCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCEEEECCCCCEEHHHHHCCCCCC
NKQSYIIGNVNDGIDFDKLRGFFCLNTKVQSDLECIECEVATGCAWCQANNYDNSVLGSN
CCCEEEEECCCCCCCHHHHCCEEEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCC
FERCKYICDMHKAQCRANNYYWGRLEDEFGIHRESYGIQKKHLYMMVSDSIEEHCNYISS
HHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHCCCCEEEEEEEEHHHHHHHHHHHCC
SQSNEIMSQKTLYDGYKFAYNNFFKPIIMHSKNLDIEKNLNFRFPLEKINIYGTNYNNEI
CCCCHHHHHHHHHCCHHHHHHHCCCEEEEECCCCCEECCCCEEECCEEEEEEECCCCCEE
NFDIEKDIQVITQSDINKCSNLTNIIFVVEENDLQNLASNISILLENVDRINLNIKSSNK
EEEECCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHEECCCEEEEEEECCCE
FNLTMYKEQLNSIVDILLEYFKKGIIKEINVITDTLYIKKMDNCEFGENNFALGPNGKIY
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEECCCCEEE
ICPAFYFEDKNSFIGSLEEGINLKDENLFKFKNAPICKNCDNYQCNRCVFFNRKYTNEFN
EEEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC
IPSSLQCRISSIERNASILFREKALKKNINIGTVRELNRLPYEDPIAVIMKNDLNPYKLK
CCCCCEEEEEHHCCCCCEEEEHHHHHCCCCCCCHHHHHCCCCCCCEEEEEECCCCCEEEC
SE
CC
>Mature Secondary Structure
MENRQRKKYKLGSGMSNWKGGQSYEVTFIVTEDCNLRCKYCYQVKKNNRNVMSFDIAKKA
CCCCCCHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEHHHHHH
VDYVLNNESLYNFDAVIWNFIGGEPFLEIDLIDKITDYIKIQTYIKKHKWFSMHRFCFSS
HHHHCCCCCEEEHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NGILYGTEEVQKYIKKNQGKCSIGISIDGTKQKHDLQRVYPDGRGSYDDVIKNIPLWISQ
CCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHCCCCEEEEC
NPGASTKVTIGHDDLPYVKDSIIHLWNLGISTVPANVVFEDVWKKGDDILFENQLKELAD
CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHH
YIIDNKLWNKFECTLFGDSMGYANSEESLNQNHCGAGKMLAIDPKGNLLPCLRYADYSLE
HHHCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCEEEECCCCCEEHHHHHCCCCCC
NKQSYIIGNVNDGIDFDKLRGFFCLNTKVQSDLECIECEVATGCAWCQANNYDNSVLGSN
CCCEEEEECCCCCCCHHHHCCEEEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCC
FERCKYICDMHKAQCRANNYYWGRLEDEFGIHRESYGIQKKHLYMMVSDSIEEHCNYISS
HHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHCCCCEEEEEEEEHHHHHHHHHHHCC
SQSNEIMSQKTLYDGYKFAYNNFFKPIIMHSKNLDIEKNLNFRFPLEKINIYGTNYNNEI
CCCCHHHHHHHHHCCHHHHHHHCCCEEEEECCCCCEECCCCEEECCEEEEEEECCCCCEE
NFDIEKDIQVITQSDINKCSNLTNIIFVVEENDLQNLASNISILLENVDRINLNIKSSNK
EEEECCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHEECCCEEEEEEECCCE
FNLTMYKEQLNSIVDILLEYFKKGIIKEINVITDTLYIKKMDNCEFGENNFALGPNGKIY
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEECCCCEEE
ICPAFYFEDKNSFIGSLEEGINLKDENLFKFKNAPICKNCDNYQCNRCVFFNRKYTNEFN
EEEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC
IPSSLQCRISSIERNASILFREKALKKNINIGTVRELNRLPYEDPIAVIMKNDLNPYKLK
CCCCCEEEEEHHCCCCCEEEEHHHHHCCCCCCCHHHHHCCCCCCCEEEEEECCCCCEEEC
SE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]