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The map label for this gene is ha17 [H]

Identifier: 153936283

GI number: 153936283

Start: 876269

End: 876709

Strand: Reverse

Name: ha17 [H]

Synonym: CLC_0858

Alternate gene names: 153936283

Gene position: 876709-876269 (Counterclockwise)

Preceding gene: 153937529

Following gene: 153935438

Centisome position: 23.31

GC content: 25.17

Gene sequence:

>441_bases
ATGTCAGTTGAAAGAACTTTTCTACCTAATGGTAATTACAATATAAAATCTATCTTTTCTGGTTCTTTATATTTAAATCC
TGTATCGAAATCATTAACATTTTCAAATGAATCTTCTGCAAATAATCAAAAATGGAATGTAGAATATATGGCTGAAAATA
GATGCTTTAAAATCTCTAATGTAGCAGAACCAAATAAGTATTTAAGTTACGATAACTTTGGATTTATTTCTTTAGATTCA
TTATCCAATAGATGCTACTGGTTTCCTATTAAAATTGCTGTAAATACTTATATTATGTTAAGTTTAAATAAAGTGAATGA
ATTAGATTATGCCTGGGACATTTATGATACTAATGAAAATATTTTAAGCCAACCACTACTCCTATTACCGAATTTTGATA
TATACAATTCAAATCAAATGTTCAAACTTGAAAAAATATAA

Upstream 100 bases:

>100_bases
GAGATGATAATCAGAAATGGAATATTCGTAACCCATAAAATTAATATTAACAAAGATTTAATATGAGTACTATCATCTAA
TTTATAAAGAGGTGAATTAT

Downstream 100 bases:

>100_bases
AGGAGAAAAGTGTATGAATTCATCTATAAAAAAAATTTATAATGATATACAAGAAAAAGTTATAAACTATAGTGATACTA
TTGATTTAGCTGATGGTAAT

Product: haemagglutinin component HA17

Products: NA

Alternate protein names: HA 17 kDa subunit [H]

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSVERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDS
LSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI

Sequences:

>Translated_146_residues
MSVERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDS
LSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI
>Mature_145_residues
SVERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSL
SNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008903
- InterPro:   IPR008997
- InterPro:   IPR000772 [H]

Pfam domain/function: PF05588 Botulinum_HA-17 [H]

EC number: NA

Molecular weight: Translated: 17034; Mature: 16903

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISN
CCCCEEECCCCCCEEEEEEECEEEEEECCCEEEECCCCCCCCCEEEEEEEECCCEEEECC
VAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNEN
CCCCCCEECCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEEECCCCCCCEEEEEEECCCH
ILSQPLLLLPNFDIYNSNQMFKLEKI
HHCCCEEEECCCCEECCCCEEEEECC
>Mature Secondary Structure 
SVERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISN
CCCEEECCCCCCEEEEEEECEEEEEECCCEEEECCCCCCCCCEEEEEEEECCCEEEECC
VAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNEN
CCCCCCEECCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEEECCCCCCCEEEEEEECCCH
ILSQPLLLLPNFDIYNSNQMFKLEKI
HHCCCEEEECCCCEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7802661; 8028579 [H]