Click here to switch to the map view.

The map label for this gene is 153936232

Identifier: 153936232

GI number: 153936232

Start: 3669220

End: 3670569

Strand: Direct

Name: 153936232

Synonym: CLC_3530

Alternate gene names: NA

Gene position: 3669220-3670569 (Clockwise)

Preceding gene: 153937220

Following gene: 153936036

Centisome position: 97.57

GC content: 31.11

Gene sequence:

>1350_bases
ATGAAAAAAGAACATAGTGAATTATTTAAAACTATAGTAAATTCCTATGTTAATGGAACATTAGAATCAGATATAGAACA
TATTCTTTCAAAATATAATTACAATAAGGAAAATTTATGTAGAATAATTTCTTCTTTATGTGGCGTAGAAGTAATTTGTG
ATTCTAACAATTTTACAGAAAACTTAGCTAATGCAATAAAATCTTATTCTTCTCAGCATAAAATAGTAAATAAAATTAAA
GATTGTTCTATGGATTGCAAAAAAGAAGGTGGCAAAACCTTTTGCCAGAATTCTTGTCCCTTTGATGCTATATTAATAAA
TAAAAAAACTAACTCCACCTACATAGATACTGAAAAATGTACAGATTGTGGTTTCTGCGTGGAGGCTTGTCCTACTGGTA
GCATACTAGATAGGATAGAATTTATACCTTTAGTAGATATTTTAAAAAGTAATGTTCCTGTAATAGCTACAGTAGCTCCT
GCTATAACTGGTCAATTCGGCGAAGATATCTCAATAAATCAGTTAAGAAGCGCCTTAAAAAAAGTAGGCTTTTCTGACAT
GATAGAAGTAGCATTTTTTGCAGATATGCTAACTTTAAAAGAAGCCATAGAATTTGATCATCTTGTTAAAAATAAAGATG
ATTTAATGATAACCTCTTGTTGTTGTCCCATGTGGGTAGCTATGGTAAGAAGGGTTTATAAAGATCTTGTTAAGTATGTT
TCCCCTTCTGTCTCTCCAATGATTGCATCTGGTAGGGTATTAAAAACCCTTAATCCCAATTGTAAAGTTGTATTTATAGG
TCCTTGTATAGCTAAAAAAGCTGAAGCTAAAGAAAAGGATTTGCAAGGTGATATAGACTTTGTACTTACCTTTTCGGAAC
TTAAGGATATATTTGATTCTTTAAATATAAATATATCAAAAATGCCAGAAGATTTTTCATCTGAATATGCCTCACGAGGT
GGAAGACTATATGCAAGAACTGGCGGTGTTTCTATAGCTGTTAAAGATGTGGTAAAAAGACTTTTCTCTGAAAAAGCAAA
GTTCTTAAAAGCTGTCCAGGGCAATGGTGTTATAGAATGTAAAAAATTACTTTCTAAAGCTGAGAAAGGCGAACTGGATG
CAAACTTTATTGAGGGAATGGGATGTATCGGTGGATGTGTTGGTGGCCCTAAAGCAATAATTCCCAAGGAACTAGGTAAA
GAAAAAGTAGACCAATTTGCAAATAATTCTTCCATAAAAATTCCTATAGATAGTCCTTGTATGGACAATATATTAAGGAA
ACTAAATATAGATTCTGCAGAAGACTTTAAAAATCCTGAAAAAATAAAAATATTCGAAAGAAAATTTTAA

Upstream 100 bases:

>100_bases
CCCGACCAAGAACTACTTTAAAAGTAGTTCTTTTTTTTATATTTTTTTATAAATAAGGATATCCTAAAGAAATAAAAAGA
TATTTTAGGAGCGTGATTAT

Downstream 100 bases:

>100_bases
AATATTTAGAATATAATATATAAATTTTATTTTTTATAAACACCCTGTTATAATTTTATTAGTATATTGTAATGGGGTGA
TTTCTTTGAAAAATATAGAG

Product: [Fe] hydrogenase

Products: NA

Alternate protein names: CpI; Fe-only hydrogenase; [Fe] hydrogenase [H]

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MKKEHSELFKTIVNSYVNGTLESDIEHILSKYNYNKENLCRIISSLCGVEVICDSNNFTENLANAIKSYSSQHKIVNKIK
DCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKCTDCGFCVEACPTGSILDRIEFIPLVDILKSNVPVIATVAP
AITGQFGEDISINQLRSALKKVGFSDMIEVAFFADMLTLKEAIEFDHLVKNKDDLMITSCCCPMWVAMVRRVYKDLVKYV
SPSVSPMIASGRVLKTLNPNCKVVFIGPCIAKKAEAKEKDLQGDIDFVLTFSELKDIFDSLNINISKMPEDFSSEYASRG
GRLYARTGGVSIAVKDVVKRLFSEKAKFLKAVQGNGVIECKKLLSKAEKGELDANFIEGMGCIGGCVGGPKAIIPKELGK
EKVDQFANNSSIKIPIDSPCMDNILRKLNIDSAEDFKNPEKIKIFERKF

Sequences:

>Translated_449_residues
MKKEHSELFKTIVNSYVNGTLESDIEHILSKYNYNKENLCRIISSLCGVEVICDSNNFTENLANAIKSYSSQHKIVNKIK
DCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKCTDCGFCVEACPTGSILDRIEFIPLVDILKSNVPVIATVAP
AITGQFGEDISINQLRSALKKVGFSDMIEVAFFADMLTLKEAIEFDHLVKNKDDLMITSCCCPMWVAMVRRVYKDLVKYV
SPSVSPMIASGRVLKTLNPNCKVVFIGPCIAKKAEAKEKDLQGDIDFVLTFSELKDIFDSLNINISKMPEDFSSEYASRG
GRLYARTGGVSIAVKDVVKRLFSEKAKFLKAVQGNGVIECKKLLSKAEKGELDANFIEGMGCIGGCVGGPKAIIPKELGK
EKVDQFANNSSIKIPIDSPCMDNILRKLNIDSAEDFKNPEKIKIFERKF
>Mature_449_residues
MKKEHSELFKTIVNSYVNGTLESDIEHILSKYNYNKENLCRIISSLCGVEVICDSNNFTENLANAIKSYSSQHKIVNKIK
DCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKCTDCGFCVEACPTGSILDRIEFIPLVDILKSNVPVIATVAP
AITGQFGEDISINQLRSALKKVGFSDMIEVAFFADMLTLKEAIEFDHLVKNKDDLMITSCCCPMWVAMVRRVYKDLVKYV
SPSVSPMIASGRVLKTLNPNCKVVFIGPCIAKKAEAKEKDLQGDIDFVLTFSELKDIFDSLNINISKMPEDFSSEYASRG
GRLYARTGGVSIAVKDVVKRLFSEKAKFLKAVQGNGVIECKKLLSKAEKGELDANFIEGMGCIGGCVGGPKAIIPKELGK
EKVDQFANNSSIKIPIDSPCMDNILRKLNIDSAEDFKNPEKIKIFERKF

Specific function: Unknown

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR009016
- InterPro:   IPR004108
- InterPro:   IPR003149
- InterPro:   IPR013352
- InterPro:   IPR001041 [H]

Pfam domain/function: PF02906 Fe_hyd_lg_C; PF02256 Fe_hyd_SSU [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 49782; Mature: 49782

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEHSELFKTIVNSYVNGTLESDIEHILSKYNYNKENLCRIISSLCGVEVICDSNNFTE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCHHH
NLANAIKSYSSQHKIVNKIKDCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKC
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCCCCCEEEEEECCCCCCEECCHHC
TDCGFCVEACPTGSILDRIEFIPLVDILKSNVPVIATVAPAITGQFGEDISINQLRSALK
CCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHH
KVGFSDMIEVAFFADMLTLKEAIEFDHLVKNKDDLMITSCCCPMWVAMVRRVYKDLVKYV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
SPSVSPMIASGRVLKTLNPNCKVVFIGPCIAKKAEAKEKDLQGDIDFVLTFSELKDIFDS
CCCCCCHHHCCCEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHH
LNINISKMPEDFSSEYASRGGRLYARTGGVSIAVKDVVKRLFSEKAKFLKAVQGNGVIEC
CCCCHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKLLSKAEKGELDANFIEGMGCIGGCVGGPKAIIPKELGKEKVDQFANNSSIKIPIDSPC
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCEEEEECCCHH
MDNILRKLNIDSAEDFKNPEKIKIFERKF
HHHHHHHCCCCCHHHCCCCCCEEEECCCC
>Mature Secondary Structure
MKKEHSELFKTIVNSYVNGTLESDIEHILSKYNYNKENLCRIISSLCGVEVICDSNNFTE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCHHH
NLANAIKSYSSQHKIVNKIKDCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKC
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCCCCCEEEEEECCCCCCEECCHHC
TDCGFCVEACPTGSILDRIEFIPLVDILKSNVPVIATVAPAITGQFGEDISINQLRSALK
CCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHH
KVGFSDMIEVAFFADMLTLKEAIEFDHLVKNKDDLMITSCCCPMWVAMVRRVYKDLVKYV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
SPSVSPMIASGRVLKTLNPNCKVVFIGPCIAKKAEAKEKDLQGDIDFVLTFSELKDIFDS
CCCCCCHHHCCCEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHH
LNINISKMPEDFSSEYASRGGRLYARTGGVSIAVKDVVKRLFSEKAKFLKAVQGNGVIEC
CCCCHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKLLSKAEKGELDANFIEGMGCIGGCVGGPKAIIPKELGKEKVDQFANNSSIKIPIDSPC
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCEEEEECCCHH
MDNILRKLNIDSAEDFKNPEKIKIFERKF
HHHHHHHCCCCCHHHCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1911757; 9836629; 10529166 [H]