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The map label for this gene is 153936176

Identifier: 153936176

GI number: 153936176

Start: 615607

End: 615798

Strand: Reverse

Name: 153936176

Synonym: CLC_0600

Alternate gene names: NA

Gene position: 615798-615607 (Counterclockwise)

Preceding gene: 153935669

Following gene: 153934934

Centisome position: 16.38

GC content: 27.6

Gene sequence:

>192_bases
ATGACAAATATAAAAGAATATAGGGAAAAAACAAATATGAAGCAAATTGATTTAGCTGAAAAAATAGGAGTTCGTAGAGA
AACGATAGTTCATCTTGAAAGTGGAAGATATAATCCATCCTTAAAAATGGCTATGGATATTGCTAAAGTATTTAATGCTA
CCGTTGAAGAATTATTTAAGTTTGAAGATTAA

Upstream 100 bases:

>100_bases
ACTAAGGGAAAAGCTGCAAGAGCATTATATAAAAGATTAGGGTTTATTCAAGATGAACTAATTATGGAATTTGGGTATCC
ATGTCAAAGATTTATTTTTA

Downstream 100 bases:

>100_bases
TCTTGCTTAAAATAAGTAAAACTTTATAATAAAAATTATACTTCAAACTAATTTTAAAAATACTTATGGCAACTAATTAT
ACATTAAATATTTTTATCGG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 63; Mature: 62

Protein sequence:

>63_residues
MTNIKEYREKTNMKQIDLAEKIGVRRETIVHLESGRYNPSLKMAMDIAKVFNATVEELFKFED

Sequences:

>Translated_63_residues
MTNIKEYREKTNMKQIDLAEKIGVRRETIVHLESGRYNPSLKMAMDIAKVFNATVEELFKFED
>Mature_62_residues
TNIKEYREKTNMKQIDLAEKIGVRRETIVHLESGRYNPSLKMAMDIAKVFNATVEELFKFED

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 7422; Mature: 7291

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIKEYREKTNMKQIDLAEKIGVRRETIVHLESGRYNPSLKMAMDIAKVFNATVEELFK
CCCHHHHHHHCCCCHHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FED
CCC
>Mature Secondary Structure 
TNIKEYREKTNMKQIDLAEKIGVRRETIVHLESGRYNPSLKMAMDIAKVFNATVEELFK
CCHHHHHHHCCCCHHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FED
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]