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The map label for this gene is yxkH [H]

Identifier: 153936172

GI number: 153936172

Start: 92434

End: 93303

Strand: Direct

Name: yxkH [H]

Synonym: CLC_0116

Alternate gene names: 153936172

Gene position: 92434-93303 (Clockwise)

Preceding gene: 153936391

Following gene: 153937227

Centisome position: 2.46

GC content: 26.21

Gene sequence:

>870_bases
TTGAAAAATAAGAAGAGTTTAATTTTTTTCGCTTTTATTATGATGATAGCAGTATTGTTTAGTGGTTGTAAAAAGAATAA
TAATGTAGATGATAATAATATTAGTGAAAAGAAAGCACAATCAAAAAAACAAGAGAGAAATATTAAAAATACTGATGTAA
GAAGTTTTACTAAGGAACCACTTATATATAATGATAAATCTGTACCTGTGCTTATGTACCATTCTATTGATTATGAAAAA
GGGAATGAATTAAGAGTACCGAAAGAACAATTTAAAGAGCAAATGGAGTATTTAAAAGATAATGGATATACTACATTAAC
ATTAAATGAGTTATATAATTTCTTAGAAAAAAATAAACCTATCCCAGAGAAGTCCATAGTCATAACACTAGATGATGGAT
ATGTTGATAACTATACTAATGCATACCCAATATTAAAAGAATTAGGGTTTAATGCTACTGTATTTGTTGTAACTAGTAAT
ATAGATAAGGATAAACGTACTTTAACTTCAAAACAAATTAAAGAAATGGATGAAGCAGGAATACAAATAGCTAGCCATAC
ATATAATCATGATAAGCTAGATGATTTGTCATATGAAAAACAGTTACAAACTATGAAGAAATCTAAGGATGATTTAGAAA
AAATATTAAATCATAAAGTAGATTTTATAGCTTATCCTTATGGTAAGTGGAATGAAGAATCTATAAAAGCTGCTAAAGAT
TCTGGGTATAAAATGGCATTTACTACCCAGGGAGGATGGTCTAATAAACAAGATGGTATTTATACTTTAAACAGGGTTTA
TATTAGCTCTTTAAAAGGTATTGATAACTTTAAAGATAGAATAACTAATCCTAATTATAATAAAAGTTAA

Upstream 100 bases:

>100_bases
TCTAAATTAAGAGTATATCCACAAATTTTTAAATCTTAATAATTAAGAGTATATATGATATAATTAAAATTACCAAATAT
TTGTGCAAGAGGGTGAGTTT

Downstream 100 bases:

>100_bases
TATTTACTTTCAAATTTTTTAGATTTTATTAGCAATATAGTCCATGAAATTTTATAAATAATAAATTTTATTTTAAATGC
GCAAGGCTATGAAATAGGGC

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKNKKSLIFFAFIMMIAVLFSGCKKNNNVDDNNISEKKAQSKKQERNIKNTDVRSFTKEPLIYNDKSVPVLMYHSIDYEK
GNELRVPKEQFKEQMEYLKDNGYTTLTLNELYNFLEKNKPIPEKSIVITLDDGYVDNYTNAYPILKELGFNATVFVVTSN
IDKDKRTLTSKQIKEMDEAGIQIASHTYNHDKLDDLSYEKQLQTMKKSKDDLEKILNHKVDFIAYPYGKWNEESIKAAKD
SGYKMAFTTQGGWSNKQDGIYTLNRVYISSLKGIDNFKDRITNPNYNKS

Sequences:

>Translated_289_residues
MKNKKSLIFFAFIMMIAVLFSGCKKNNNVDDNNISEKKAQSKKQERNIKNTDVRSFTKEPLIYNDKSVPVLMYHSIDYEK
GNELRVPKEQFKEQMEYLKDNGYTTLTLNELYNFLEKNKPIPEKSIVITLDDGYVDNYTNAYPILKELGFNATVFVVTSN
IDKDKRTLTSKQIKEMDEAGIQIASHTYNHDKLDDLSYEKQLQTMKKSKDDLEKILNHKVDFIAYPYGKWNEESIKAAKD
SGYKMAFTTQGGWSNKQDGIYTLNRVYISSLKGIDNFKDRITNPNYNKS
>Mature_289_residues
MKNKKSLIFFAFIMMIAVLFSGCKKNNNVDDNNISEKKAQSKKQERNIKNTDVRSFTKEPLIYNDKSVPVLMYHSIDYEK
GNELRVPKEQFKEQMEYLKDNGYTTLTLNELYNFLEKNKPIPEKSIVITLDDGYVDNYTNAYPILKELGFNATVFVVTSN
IDKDKRTLTSKQIKEMDEAGIQIASHTYNHDKLDDLSYEKQLQTMKKSKDDLEKILNHKVDFIAYPYGKWNEESIKAAKD
SGYKMAFTTQGGWSNKQDGIYTLNRVYISSLKGIDNFKDRITNPNYNKS

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=240, Percent_Identity=29.1666666666667, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787260, Length=256, Percent_Identity=25.78125, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33557; Mature: 33557

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKSLIFFAFIMMIAVLFSGCKKNNNVDDNNISEKKAQSKKQERNIKNTDVRSFTKEP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCC
LIYNDKSVPVLMYHSIDYEKGNELRVPKEQFKEQMEYLKDNGYTTLTLNELYNFLEKNKP
CEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCC
IPEKSIVITLDDGYVDNYTNAYPILKELGFNATVFVVTSNIDKDKRTLTSKQIKEMDEAG
CCCCEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHC
IQIASHTYNHDKLDDLSYEKQLQTMKKSKDDLEKILNHKVDFIAYPYGKWNEESIKAAKD
CEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHC
SGYKMAFTTQGGWSNKQDGIYTLNRVYISSLKGIDNFKDRITNPNYNKS
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKNKKSLIFFAFIMMIAVLFSGCKKNNNVDDNNISEKKAQSKKQERNIKNTDVRSFTKEP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCC
LIYNDKSVPVLMYHSIDYEKGNELRVPKEQFKEQMEYLKDNGYTTLTLNELYNFLEKNKP
CEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCC
IPEKSIVITLDDGYVDNYTNAYPILKELGFNATVFVVTSNIDKDKRTLTSKQIKEMDEAG
CCCCEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHC
IQIASHTYNHDKLDDLSYEKQLQTMKKSKDDLEKILNHKVDFIAYPYGKWNEESIKAAKD
CEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHC
SGYKMAFTTQGGWSNKQDGIYTLNRVYISSLKGIDNFKDRITNPNYNKS
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]