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The map label for this gene is yrdC [H]

Identifier: 153936120

GI number: 153936120

Start: 1019545

End: 1020084

Strand: Direct

Name: yrdC [H]

Synonym: CLC_1001

Alternate gene names: 153936120

Gene position: 1019545-1020084 (Clockwise)

Preceding gene: 153937166

Following gene: 153934800

Centisome position: 27.11

GC content: 26.67

Gene sequence:

>540_bases
ATGAGTAATATTGCTTTACTAGTAGTGGATGTTCAAAATGCATTGATTAATGTACATCCTCATAATGAACAAAGAGTAAT
TGAAAATATTAAAAAACTTATTTTAACTGCAAGAGATAATAAAAAAGAAGTTGTGTATGTACGTCACGATGATGGAAAGG
GTACAGAGCTTGAAAATGGCACATATGGATGGCAGATTTATGATAAAATATCACCTAATAGTAATAAATTAATCTTTGAA
AAACAGTATAATAGTGCTTTTCATAAAACTGATTTAAAGGAATATTTAGATATCAAGAATATAGATACAATAATATTGGT
TGGGCTTCAAACAGAATATTGTATTGATGCTACTTGTAAAAGTGCTTTCGATTATGGTTATAAAATAATTATTCCAGAAG
AAACAAATACAACTTTTGCTAATGATTATCTATCTGGTGAAAAACTTTATGAGTTTTATAACTATAAGATTTGGAATAAA
CGTTTTGCCGATGTTATATCAGTTGAGGAAGTTATAAAAATTCTAGAAAATGATTTTTGA

Upstream 100 bases:

>100_bases
AAGGGGCTTGTATTTATAATTAGAAGTGTTAATTTCTACACATTTGTAAGGTATTATAAATTAAAGATTAATTATATTTT
TAATGAAAGGGAGTAAGTAT

Downstream 100 bases:

>100_bases
TACATATAATTACTTTTAAAAATATATCATATGGCACGTATAAACTAATGAGTTAAGTAAAATTGATAATTTCCCATCAG
AAGAAATTAATCTATATGTT

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSNIALLVVDVQNALINVHPHNEQRVIENIKKLILTARDNKKEVVYVRHDDGKGTELENGTYGWQIYDKISPNSNKLIFE
KQYNSAFHKTDLKEYLDIKNIDTIILVGLQTEYCIDATCKSAFDYGYKIIIPEETNTTFANDYLSGEKLYEFYNYKIWNK
RFADVISVEEVIKILENDF

Sequences:

>Translated_179_residues
MSNIALLVVDVQNALINVHPHNEQRVIENIKKLILTARDNKKEVVYVRHDDGKGTELENGTYGWQIYDKISPNSNKLIFE
KQYNSAFHKTDLKEYLDIKNIDTIILVGLQTEYCIDATCKSAFDYGYKIIIPEETNTTFANDYLSGEKLYEFYNYKIWNK
RFADVISVEEVIKILENDF
>Mature_178_residues
SNIALLVVDVQNALINVHPHNEQRVIENIKKLILTARDNKKEVVYVRHDDGKGTELENGTYGWQIYDKISPNSNKLIFEK
QYNSAFHKTDLKEYLDIKNIDTIILVGLQTEYCIDATCKSAFDYGYKIIIPEETNTTFANDYLSGEKLYEFYNYKIWNKR
FADVISVEEVIKILENDF

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20885; Mature: 20754

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIALLVVDVQNALINVHPHNEQRVIENIKKLILTARDNKKEVVYVRHDDGKGTELENG
CCCEEEEEEEECCEEEEECCCCHHHHHHHHHHHEEECCCCCCEEEEEEECCCCCCCCCCC
TYGWQIYDKISPNSNKLIFEKQYNSAFHKTDLKEYLDIKNIDTIILVGLQTEYCIDATCK
EECEEEEEEECCCCCEEEEEECCCCHHHHCCHHHHHCCCCCCEEEEEECCCCEEHHHHHH
SAFDYGYKIIIPEETNTTFANDYLSGEKLYEFYNYKIWNKRFADVISVEEVIKILENDF
HHHHCCEEEEEECCCCCEECCCCCCHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNIALLVVDVQNALINVHPHNEQRVIENIKKLILTARDNKKEVVYVRHDDGKGTELENG
CCEEEEEEEECCEEEEECCCCHHHHHHHHHHHEEECCCCCCEEEEEEECCCCCCCCCCC
TYGWQIYDKISPNSNKLIFEKQYNSAFHKTDLKEYLDIKNIDTIILVGLQTEYCIDATCK
EECEEEEEEECCCCCEEEEEECCCCHHHHCCHHHHHCCCCCCEEEEEECCCCEEHHHHHH
SAFDYGYKIIIPEETNTTFANDYLSGEKLYEFYNYKIWNKRFADVISVEEVIKILENDF
HHHHCCEEEEEECCCCCEECCCCCCHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]