Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 153936022

GI number: 153936022

Start: 2257785

End: 2258705

Strand: Reverse

Name: yddE [C]

Synonym: CLC_2125

Alternate gene names: 153936022

Gene position: 2258705-2257785 (Counterclockwise)

Preceding gene: 153937509

Following gene: 153936389

Centisome position: 60.06

GC content: 45.39

Gene sequence:

>921_bases
ATGAGAAAATTTGAGTATACCTTGGTGGATGTTTTTACAAATCAGGTGTTTGGCGGAAATCAGCTGGCCGTATTCAAAGA
TGCGGAAAAGCTGTCAAGTGAAGAAATGCAGAGTATTGCGAGAGAGCTTAATTTTTCCGAAACAACCTTTGTTACAGATA
TTGGGCCAAATCATAAAAAGCTCAGAATATTTACACCAAAAACCGAGCTGCCTATGGCAGGCCACCCAACCATCGGTACG
GCTTTTGTTCTTGCTGATGAAGGCGTTATCGAAACCCGCGAGGGAATAAACAAGCTTATTTTTGAAGAAGGCGTCGGAGA
AATAGCTGTTTCTATTCACGTGGAAGGGGGGAGAATCAGGTCGATTGAAATGGAACAGCCTATGCCGGTATTCGGGCGGG
TCTTTGGAGATATAAGGACAGCCGCCGAACTACTCTCCCTTGATATCGCCGATATTGATACAACCAGCCCCATACAGACA
GTGTCTACCGGCGTGCCTTTTTTGTATATCCCGCTAAAAAGCCTGGATGTGATCAGCAAGATAAAGCTAAGGCTTGATAC
ATGGGAGAAGTTCTTTTCGGCAAGCGAGGATACGAAACATATATTCGCTTTTACTAGGGAAACCCTCCATGCCGGATCAA
CCATACACAGCAGGATGTTCGCTCCGGCGATGGGCATTGCAGAAGATCCGGCTACAGGCGGGGCAAGCGGTCCGCTGGGA
GCATATTTGGTTGAACACGGTCTGGTGGCACACGGGTATGACGGTAAATATATGATTATAAATGAGCAGGGAATTGAAAT
GGGAAGACCGAGCTTTATTAATATTACTGTTAGCAAAACGTATAATAATTTTTCTGAAATCAAGATCGGTGGAACCTGTG
TGAAATTTGGAGCCGGGTTGATCGAGCTGCCGACTTTATAG

Upstream 100 bases:

>100_bases
AATCTTAGGAAAATTATTTTTTTCAAAAATCCCAAATAAATTCATTTGCTATAATATCAAAAAGAAATATTAGGAAACAA
TGAATGGGAGGAATTCAATT

Downstream 100 bases:

>100_bases
CTCAGGCTTCGCATGTAAAAAATATAAATTCCATTATCGGGTAATACTAGAAGTAGCTAAAGGACTGCTGATGTATAGTA
CAAAATTGATATAATATGGT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGT
AFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQT
VSTGVPFLYIPLKSLDVISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
AYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL

Sequences:

>Translated_306_residues
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGT
AFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQT
VSTGVPFLYIPLKSLDVISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
AYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL
>Mature_306_residues
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGT
AFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQT
VSTGVPFLYIPLKSLDVISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
AYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=291, Percent_Identity=35.3951890034364, Blast_Score=127, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17542160, Length=92, Percent_Identity=44.5652173913043, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17542154, Length=92, Percent_Identity=44.5652173913043, Blast_Score=70, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6321818, Length=309, Percent_Identity=28.1553398058252, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33539; Mature: 33539

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKK
CCCEEEEHEEEHHHCCCCCCEEEEEECHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCE
LRIFTPKTELPMAGHPTIGTAFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIR
EEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEE
SIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDVISK
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHH
IKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHH
AYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGL
HHHHHCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCEEEECCCCE
IELPTL
EECCCC
>Mature Secondary Structure
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKK
CCCEEEEHEEEHHHCCCCCCEEEEEECHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCE
LRIFTPKTELPMAGHPTIGTAFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIR
EEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEE
SIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDVISK
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHH
IKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHH
AYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGL
HHHHHCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCEEEECCCCE
IELPTL
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]