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The map label for this gene is ydjZ [C]

Identifier: 153935942

GI number: 153935942

Start: 404716

End: 405390

Strand: Direct

Name: ydjZ [C]

Synonym: CLC_0414

Alternate gene names: 153935942

Gene position: 404716-405390 (Clockwise)

Preceding gene: 153936917

Following gene: 153935621

Centisome position: 10.76

GC content: 26.37

Gene sequence:

>675_bases
ATGAAAAATAAAAAAGACTTATTTAAAATAATTGGTTTAAGTTTAATTATTATTATTGTAGCTATGTTTTTGTTAAGACA
TGGGCATGCAATTAGAAGAATGAATATAAAGCATACAGTAAGATACATTAGAAGTTGTGGAAAATTCTCATCTATATGCT
TTTTATTAATATATGCTTTAAAACCATTAGTTATTATTATTCCAGCTTCCATGTTGTCCCTTGTAGGTGGAGTTTTATTT
GGACCTGTAAAGGGATTTATATTAAATATGTTGGGCTTTTTCTTATCTGGAAGCTTAGCCTTTTGGTTAAGTAGGCTTTT
AGGCAAATCCTTTGTGGATAAGATTTTAAGGGGAAAAGCTATAGAATTAGATAATAACATAGAAAAAGAAGGTTTTAAGA
TTATATTTCTTTTGAGGTTTCCACCAATATTTCCTTATGATCCTATAAGTTATGCTTCAGGACTTACAAAAATGAAATAT
AAACATTTTGTTTTAGGATCTTTGTTAGGAGTCATACCAGAAACTATGTGTTATTCTTATATGGGAAAAAATGTTATGAA
TCCTTTGACTTCAAAATTTATAGTCCCTGTAATTTTAGTTATACTAACTACAATTATAGGAATTTATGTTTATAAAAAAA
GTAAAATTAATGTTGTAAAAGATGAAAAATTATAG

Upstream 100 bases:

>100_bases
TATAATGTTATGAAAAATTCATTTATAAATCAAGCTAATAATCCACCACTCTTAATTTGTATAGAAAAAAGGTAAAATGT
GTTGAGGAGAATGTTAACTT

Downstream 100 bases:

>100_bases
TTTGAAAACACAATAATTCTAGTAAACATTTAAATAATAAGAAGGTGTTTCAAAATAAAATCTATTTTGAGACACCTTCT
TTTTAGTTTAGATATTTAAA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKNKKDLFKIIGLSLIIIIVAMFLLRHGHAIRRMNIKHTVRYIRSCGKFSSICFLLIYALKPLVIIIPASMLSLVGGVLF
GPVKGFILNMLGFFLSGSLAFWLSRLLGKSFVDKILRGKAIELDNNIEKEGFKIIFLLRFPPIFPYDPISYASGLTKMKY
KHFVLGSLLGVIPETMCYSYMGKNVMNPLTSKFIVPVILVILTTIIGIYVYKKSKINVVKDEKL

Sequences:

>Translated_224_residues
MKNKKDLFKIIGLSLIIIIVAMFLLRHGHAIRRMNIKHTVRYIRSCGKFSSICFLLIYALKPLVIIIPASMLSLVGGVLF
GPVKGFILNMLGFFLSGSLAFWLSRLLGKSFVDKILRGKAIELDNNIEKEGFKIIFLLRFPPIFPYDPISYASGLTKMKY
KHFVLGSLLGVIPETMCYSYMGKNVMNPLTSKFIVPVILVILTTIIGIYVYKKSKINVVKDEKL
>Mature_224_residues
MKNKKDLFKIIGLSLIIIIVAMFLLRHGHAIRRMNIKHTVRYIRSCGKFSSICFLLIYALKPLVIIIPASMLSLVGGVLF
GPVKGFILNMLGFFLSGSLAFWLSRLLGKSFVDKILRGKAIELDNNIEKEGFKIIFLLRFPPIFPYDPISYASGLTKMKY
KHFVLGSLLGVIPETMCYSYMGKNVMNPLTSKFIVPVILVILTTIIGIYVYKKSKINVVKDEKL

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI1788049, Length=227, Percent_Identity=27.3127753303965, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87081964, Length=183, Percent_Identity=30.0546448087432, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25326; Mature: 25326

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKDLFKIIGLSLIIIIVAMFLLRHGHAIRRMNIKHTVRYIRSCGKFSSICFLLIYAL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KPLVIIIPASMLSLVGGVLFGPVKGFILNMLGFFLSGSLAFWLSRLLGKSFVDKILRGKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
IELDNNIEKEGFKIIFLLRFPPIFPYDPISYASGLTKMKYKHFVLGSLLGVIPETMCYSY
CCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKNVMNPLTSKFIVPVILVILTTIIGIYVYKKSKINVVKDEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKNKKDLFKIIGLSLIIIIVAMFLLRHGHAIRRMNIKHTVRYIRSCGKFSSICFLLIYAL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KPLVIIIPASMLSLVGGVLFGPVKGFILNMLGFFLSGSLAFWLSRLLGKSFVDKILRGKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
IELDNNIEKEGFKIIFLLRFPPIFPYDPISYASGLTKMKYKHFVLGSLLGVIPETMCYSY
CCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKNVMNPLTSKFIVPVILVILTTIIGIYVYKKSKINVVKDEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]