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The map label for this gene is cas6

Identifier: 153935860

GI number: 153935860

Start: 2251939

End: 2252628

Strand: Reverse

Name: cas6

Synonym: CLC_2121

Alternate gene names: NA

Gene position: 2252628-2251939 (Counterclockwise)

Preceding gene: 153937087

Following gene: 153937422

Centisome position: 59.9

GC content: 25.51

Gene sequence:

>690_bases
ATGGAATTTTGTGAACTGATTGCAACAGTGATGTTAAAAAAAGATATATATTTTGAAGATTGTGGATATATAATAGGGAA
AAACATAAATAAAAGTATGCTTTTGGATAAAGATTTAAAGGAAATACATCCAAAGAAACAGTACAAAAATTACGTATTTA
ATAGTTTTTATCCTATAGAAAGAGACAAATTTTATAAAAAGGATAGATTATATATTTTTAATATTAGGGGATTGAGTAAA
GAATTTATAGATAAAATAGAAACTTGCTTATGTAATTTGGAAAGTAATGATTTTAATGTTATTTCAACTTCTAAAAAAGA
GATAAAACAAAGATATATCAAAGAATTGTATACTCAAACACCATTAATAATAACTGTAGATGATAAGCCTTGGCTTCAAA
ATGATGGGGATTTAGATTTGTTTAAACAAAGATTAGAAGATAATTTAGAAAAGAAATATAAAAGCTTTTTTAATGAAGAT
ATAGATGTAAAAGGTAAATTCATAAAGAGCATAGAGTTTAAAAATAGAAAACCAATGCATTATAACTATAAGAATGGGAT
AAAATTATTAGCTAATAAAGTAAGTATACAAATTAAAGATAATGAAGAAGCCCAAAAAGTGGCTTTCTTAGCTAGAGCAA
TCGGATTGGGTGAGAAGAATCCATCAATAGGAGCGGGGTTTTGCAAGTAG

Upstream 100 bases:

>100_bases
AAAGATAATAATATTTTTAAAATAAAAGTAGAATAATCGGTTATATTAACTAAAGGCTATATGGTATAATATAGATAAAT
TTGTATAAAGAGGTGCATAA

Downstream 100 bases:

>100_bases
AAGGTAGGAAGGTGAAAGAATGGGTAAAACTTTAAGATTTGAAATTGTATCAGGAGTAAATAAAGGTTATTTTCATACTA
ATAGCCAAAGTGAAAGTTTA

Product: CRISPR-associated Cas family protein

Products: NA

Alternate protein names: Crispr-Associated Protein; CRISPR-Associated Cas5e Family Protein

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIERDKFYKKDRLYIFNIRGLSK
EFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQTPLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNED
IDVKGKFIKSIEFKNRKPMHYNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK

Sequences:

>Translated_229_residues
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIERDKFYKKDRLYIFNIRGLSK
EFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQTPLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNED
IDVKGKFIKSIEFKNRKPMHYNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK
>Mature_229_residues
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIERDKFYKKDRLYIFNIRGLSK
EFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQTPLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNED
IDVKGKFIKSIEFKNRKPMHYNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK

Specific function: Unknown

COG id: COG1583

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27054; Mature: 27054

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIE
CCHHHHHHHHHHHHCCCHHHCCCEECCCCCHHHHHCCHHHHCCCHHHHHHHHHHCCCCCC
RDKFYKKDRLYIFNIRGLSKEFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQT
HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCC
PLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNEDIDVKGKFIKSIEFKNRKPMH
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
YNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK
CCHHCCHHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIE
CCHHHHHHHHHHHHCCCHHHCCCEECCCCCHHHHHCCHHHHCCCHHHHHHHHHHCCCCCC
RDKFYKKDRLYIFNIRGLSKEFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQT
HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCC
PLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNEDIDVKGKFIKSIEFKNRKPMH
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
YNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK
CCHHCCHHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA