| Definition | Clostridium botulinum A str. Hall, complete genome. |
|---|---|
| Accession | NC_009698 |
| Length | 3,760,560 |
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The map label for this gene is ybjZ [C]
Identifier: 153935847
GI number: 153935847
Start: 858126
End: 860792
Strand: Direct
Name: ybjZ [C]
Synonym: CLC_0840
Alternate gene names: 153935847
Gene position: 858126-860792 (Clockwise)
Preceding gene: 153937023
Following gene: 153935093
Centisome position: 22.82
GC content: 26.21
Gene sequence:
>2667_bases TTGAAAAGCTATAGTGAAATTACAGGAAGATATTTAAAACAGAATAAGAAAAGAACCATATTAACAATAGTAGGAATAAT ATTAGCTATATCTTTATTCTCTGGTATAGGAAATTTATTTTTTAGTATGAGAGATGGTTTAGTAACAAATGAAAGAAAAA ATAAAGGTAATTATGAAGTAAAATATTTTGGTGTTAATAAAGACAAGGTAAATAAATTAAGTAATAATTTTGAGATTAAA GATTATGGTGTAAGTAAAGATAATAATTTCTTTATTTTAAAGGATGATAAAAATAAAGAAAATAAAAGTGCAATGGATAA TAAACCTAAAATAATAAATTTAGATTTTTATGATAATAGTATGTTAAATAATGTAATGACCATTAATATGAAGGAAGGAA GAAAACCAAAGGCAGCAGATGAAATAATATTAGAAAAAAGAGCAAAAACAAAATTTGGAAAAAAAGTAGGAGATTATATA GAAGCAAATAATATAGATCCAGAAGTTCTTGTAAAATCCCTTAAAGTTGATTCAAAAATTACTGAACAATCTAATTTACA AAAATTACAGTCAAATGAAGTTAAAAGCTACAAAATAGTAGGATATTATGAGAAAGGGCTTAGTCAGACAAGTGATCTTT ATGAAGCTAGAGGATATTTAGATAAAAATTCTATGAAAAAAGATGATAATTATTCTTTTTATGCAAATCTTAAAGAGAAG AAAAATAAAGTAGATATAGGTAAAAAAGTAGGTAGCACAGTAGGGTTAAGTGAAAAAAAAGAAATAGATGGAATTCCAGA AATAAGTTTTAATAACGCTGTATTAAGACTTATGGCAGAGGGAAATGATACTTTATTAAATAAGGACACAATGAGCGTAT TTATATTCATTGCAACTTTAATAATAGTATGCACTGTAGCTGTTATTTATAATGCTTTTAATATATCTGTAGCAGAGAGA ATAAATCAATTTGGTGTATTAAGAAGTATAGGAGCTACTCCAGGAAAAATAAGAAAATTAGTATTTAAAGAAGCTTTTAT AATGAGCATTATAGCAATTCCTATAGGAATTCTTTCAGGATATTTAGGTATTTATACTACAATAAAGCTCATGTCAAATT CAGAAAGGTTTGTGTTTGAAGGTTTAAAAATAGGATTTTATAAAGAAGTTATACTTATATGTATTGTACTTACACTTATA ACTATAATATTATCTGTACTAGGACCAGCTATAAAAGCCTCTAAAGTATCGCCAATAGATGCTATAAGAAATTCTTCAAA TCTAAAAAAAGAAAAGATAAGAAGAAGAAAAGGTAGACTTATCAAATTAATATTTGGTATAGAAGGGGCAGTGGCCTACA AAAATATAAGAAGAAATAATAAGAGATTTATAATAACAGTTTTTTCTCTTATGATATCTCTGATAATGTTTATAATTATT ACATCTATGACTAAGATGACAGATGAAGTAACTAAACAGCTTATATCTTCAGCACCTTTTGATGCTGTTATTCAGACTAA AGAATCAATGGATGAAAAATTTATATCTGAAATTAAGAGTAAAGATGGTATAAAAAAAGTATATACTCCAAAGATTAGAA GGGCTTTAGTTTATTTGGAAAAGGATATTCTAAATGAAAAATATTATGAAAAAATAAATAAAGATATGCCTAAAAGTGAA AAGATTAAAGGAAAGGATTATGTGTGCTTAGATCAAGTAACATATTCAGCCTATGATAAATCTTCCTTTGAAGAGGTAAA AAATAATTTAGCAGATGGAAAAATAGATACGGAAGCTTTAAATAATAATGGTGTACTACTTATAAATAGAAATGAGGTAA GCAAGAAAAATGGAGGAAGAGTAGTAGCAGATATTACAAAATATAAAGTTGGAGATAAAATAAGAATTCCAAGGACTAAA GATAAATTTTACCCTCAAATGGGAGAAAATAAGAAACTTGATCTAAAAGGTGAATTTAAACAAGGTGTGGAAAAGGGAGA TTTTATTGAACTTACTATAGTAGGGATATTAAACAAAGATATTTTCAATATAAGTGCGGCAAATAATAGCATAGGCTTAG TTTTCAGTGATAAATGTTTTGAGAAGAATTTTGGTAAACTTCCTATAGACGCAGTTGCTATAAATTATAAAAATGAAAAA GCTGGGGAAAAATATGCAGGTTATTTTGAAGAAAAGGCAGAAGAACTTCAAGGGTCGTATATGGATCTTCATAGTGTGAA TGATCAAATGGATAGTATTCAAAAACAAATAGCAGTATTTATGTATGGTTTTATAGCCATAATAACTATAATAGGAATGG TAAATATAATAAATACCATAACTATAGGATTACTTCTTAGAAAATCAGAGTTTGCAACTTTAACAGCCATAGGAATGACA AAATCTCAATTAAATAAAATGGTAATGCTAGAAGGATTACTTCATGGGATATTTACCAGTGTATTTGGATCAATTATATC CTATATATTATATAATTTCCTTTTAAAACAAAGTTTCAATTTTATAAATTTTGATATTAAGTTCCCTATAGATGTATTTA TAACAGGTATTTTAGGGGTAATAGCTATAACACTTTTAGCTTCTATAATACCACTTAGAAGACTTAAAAAAATGAGCATA GTAGAAAACATAAGAGCTAAGGAATAA
Upstream 100 bases:
>100_bases ACACTAGTGCTTATAACCCATGACTTAAATATAGCAAAAATGGCGGATAGAGTTATAACCATAGCAGACGGAGAAGTTAA AGGGGACGAGGTGAACAAAG
Downstream 100 bases:
>100_bases AAATATTAAAAATTGTGTTTTAAAATAGATTTAATTTCAACGATGCAAAGATAAAAAATATATTTATTATATATTTTTTA TCTTTGCTATATCAAAATTT
Product: putative ABC transporter, permease protein
Products: NA
Alternate protein names: ABC Transporter Permease Protein; Permease; ABC Transporter-Associated Permease; Efflux ABC Transporter Permease Protein; ATP Transporter Permease
Number of amino acids: Translated: 888; Mature: 888
Protein sequence:
>888_residues MKSYSEITGRYLKQNKKRTILTIVGIILAISLFSGIGNLFFSMRDGLVTNERKNKGNYEVKYFGVNKDKVNKLSNNFEIK DYGVSKDNNFFILKDDKNKENKSAMDNKPKIINLDFYDNSMLNNVMTINMKEGRKPKAADEIILEKRAKTKFGKKVGDYI EANNIDPEVLVKSLKVDSKITEQSNLQKLQSNEVKSYKIVGYYEKGLSQTSDLYEARGYLDKNSMKKDDNYSFYANLKEK KNKVDIGKKVGSTVGLSEKKEIDGIPEISFNNAVLRLMAEGNDTLLNKDTMSVFIFIATLIIVCTVAVIYNAFNISVAER INQFGVLRSIGATPGKIRKLVFKEAFIMSIIAIPIGILSGYLGIYTTIKLMSNSERFVFEGLKIGFYKEVILICIVLTLI TIILSVLGPAIKASKVSPIDAIRNSSNLKKEKIRRRKGRLIKLIFGIEGAVAYKNIRRNNKRFIITVFSLMISLIMFIII TSMTKMTDEVTKQLISSAPFDAVIQTKESMDEKFISEIKSKDGIKKVYTPKIRRALVYLEKDILNEKYYEKINKDMPKSE KIKGKDYVCLDQVTYSAYDKSSFEEVKNNLADGKIDTEALNNNGVLLINRNEVSKKNGGRVVADITKYKVGDKIRIPRTK DKFYPQMGENKKLDLKGEFKQGVEKGDFIELTIVGILNKDIFNISAANNSIGLVFSDKCFEKNFGKLPIDAVAINYKNEK AGEKYAGYFEEKAEELQGSYMDLHSVNDQMDSIQKQIAVFMYGFIAIITIIGMVNIINTITIGLLLRKSEFATLTAIGMT KSQLNKMVMLEGLLHGIFTSVFGSIISYILYNFLLKQSFNFINFDIKFPIDVFITGILGVIAITLLASIIPLRRLKKMSI VENIRAKE
Sequences:
>Translated_888_residues MKSYSEITGRYLKQNKKRTILTIVGIILAISLFSGIGNLFFSMRDGLVTNERKNKGNYEVKYFGVNKDKVNKLSNNFEIK DYGVSKDNNFFILKDDKNKENKSAMDNKPKIINLDFYDNSMLNNVMTINMKEGRKPKAADEIILEKRAKTKFGKKVGDYI EANNIDPEVLVKSLKVDSKITEQSNLQKLQSNEVKSYKIVGYYEKGLSQTSDLYEARGYLDKNSMKKDDNYSFYANLKEK KNKVDIGKKVGSTVGLSEKKEIDGIPEISFNNAVLRLMAEGNDTLLNKDTMSVFIFIATLIIVCTVAVIYNAFNISVAER INQFGVLRSIGATPGKIRKLVFKEAFIMSIIAIPIGILSGYLGIYTTIKLMSNSERFVFEGLKIGFYKEVILICIVLTLI TIILSVLGPAIKASKVSPIDAIRNSSNLKKEKIRRRKGRLIKLIFGIEGAVAYKNIRRNNKRFIITVFSLMISLIMFIII TSMTKMTDEVTKQLISSAPFDAVIQTKESMDEKFISEIKSKDGIKKVYTPKIRRALVYLEKDILNEKYYEKINKDMPKSE KIKGKDYVCLDQVTYSAYDKSSFEEVKNNLADGKIDTEALNNNGVLLINRNEVSKKNGGRVVADITKYKVGDKIRIPRTK DKFYPQMGENKKLDLKGEFKQGVEKGDFIELTIVGILNKDIFNISAANNSIGLVFSDKCFEKNFGKLPIDAVAINYKNEK AGEKYAGYFEEKAEELQGSYMDLHSVNDQMDSIQKQIAVFMYGFIAIITIIGMVNIINTITIGLLLRKSEFATLTAIGMT KSQLNKMVMLEGLLHGIFTSVFGSIISYILYNFLLKQSFNFINFDIKFPIDVFITGILGVIAITLLASIIPLRRLKKMSI VENIRAKE >Mature_888_residues MKSYSEITGRYLKQNKKRTILTIVGIILAISLFSGIGNLFFSMRDGLVTNERKNKGNYEVKYFGVNKDKVNKLSNNFEIK DYGVSKDNNFFILKDDKNKENKSAMDNKPKIINLDFYDNSMLNNVMTINMKEGRKPKAADEIILEKRAKTKFGKKVGDYI EANNIDPEVLVKSLKVDSKITEQSNLQKLQSNEVKSYKIVGYYEKGLSQTSDLYEARGYLDKNSMKKDDNYSFYANLKEK KNKVDIGKKVGSTVGLSEKKEIDGIPEISFNNAVLRLMAEGNDTLLNKDTMSVFIFIATLIIVCTVAVIYNAFNISVAER INQFGVLRSIGATPGKIRKLVFKEAFIMSIIAIPIGILSGYLGIYTTIKLMSNSERFVFEGLKIGFYKEVILICIVLTLI TIILSVLGPAIKASKVSPIDAIRNSSNLKKEKIRRRKGRLIKLIFGIEGAVAYKNIRRNNKRFIITVFSLMISLIMFIII TSMTKMTDEVTKQLISSAPFDAVIQTKESMDEKFISEIKSKDGIKKVYTPKIRRALVYLEKDILNEKYYEKINKDMPKSE KIKGKDYVCLDQVTYSAYDKSSFEEVKNNLADGKIDTEALNNNGVLLINRNEVSKKNGGRVVADITKYKVGDKIRIPRTK DKFYPQMGENKKLDLKGEFKQGVEKGDFIELTIVGILNKDIFNISAANNSIGLVFSDKCFEKNFGKLPIDAVAINYKNEK AGEKYAGYFEEKAEELQGSYMDLHSVNDQMDSIQKQIAVFMYGFIAIITIIGMVNIINTITIGLLLRKSEFATLTAIGMT KSQLNKMVMLEGLLHGIFTSVFGSIISYILYNFLLKQSFNFINFDIKFPIDVFITGILGVIAITLLASIIPLRRLKKMSI VENIRAKE
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100405; Mature: 100405
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSYSEITGRYLKQNKKRTILTIVGIILAISLFSGIGNLFFSMRDGLVTNERKNKGNYEV CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE KYFGVNKDKVNKLSNNFEIKDYGVSKDNNFFILKDDKNKENKSAMDNKPKIINLDFYDNS EEEECCHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCHHHCCCCCCEEEEECCCCH MLNNVMTINMKEGRKPKAADEIILEKRAKTKFGKKVGDYIEANNIDPEVLVKSLKVDSKI HHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH TEQSNLQKLQSNEVKSYKIVGYYEKGLSQTSDLYEARGYLDKNSMKKDDNYSFYANLKEK HHHHHHHHHHCCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHH KNKVDIGKKVGSTVGLSEKKEIDGIPEISFNNAVLRLMAEGNDTLLNKDTMSVFIFIATL CCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHH IIVCTVAVIYNAFNISVAERINQFGVLRSIGATPGKIRKLVFKEAFIMSIIAIPIGILSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YLGIYTTIKLMSNSERFVFEGLKIGFYKEVILICIVLTLITIILSVLGPAIKASKVSPID HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHH AIRNSSNLKKEKIRRRKGRLIKLIFGIEGAVAYKNIRRNNKRFIITVFSLMISLIMFIII HHCCCCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH TSMTKMTDEVTKQLISSAPFDAVIQTKESMDEKFISEIKSKDGIKKVYTPKIRRALVYLE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH KDILNEKYYEKINKDMPKSEKIKGKDYVCLDQVTYSAYDKSSFEEVKNNLADGKIDTEAL HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHCCCCCCCHHEE NNNGVLLINRNEVSKKNGGRVVADITKYKVGDKIRIPRTKDKFYPQMGENKKLDLKGEFK CCCCEEEEECCCCCCCCCCEEEEEHHHCCCCCEEECCCCHHHCCCCCCCCCCCCCCCHHH QGVEKGDFIELTIVGILNKDIFNISAANNSIGLVFSDKCFEKNFGKLPIDAVAINYKNEK CCCCCCCEEEEEEEEECCCCCEEEEECCCCEEEEECCHHHHCCCCCCCEEEEEEECCCCC AGEKYAGYFEEKAEELQGSYMDLHSVNDQMDSIQKQIAVFMYGFIAIITIIGMVNIINTI CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIGLLLRKSEFATLTAIGMTKSQLNKMVMLEGLLHGIFTSVFGSIISYILYNFLLKQSFN HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FINFDIKFPIDVFITGILGVIAITLLASIIPLRRLKKMSIVENIRAKE EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKSYSEITGRYLKQNKKRTILTIVGIILAISLFSGIGNLFFSMRDGLVTNERKNKGNYEV CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE KYFGVNKDKVNKLSNNFEIKDYGVSKDNNFFILKDDKNKENKSAMDNKPKIINLDFYDNS EEEECCHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCHHHCCCCCCEEEEECCCCH MLNNVMTINMKEGRKPKAADEIILEKRAKTKFGKKVGDYIEANNIDPEVLVKSLKVDSKI HHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH TEQSNLQKLQSNEVKSYKIVGYYEKGLSQTSDLYEARGYLDKNSMKKDDNYSFYANLKEK HHHHHHHHHHCCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHH KNKVDIGKKVGSTVGLSEKKEIDGIPEISFNNAVLRLMAEGNDTLLNKDTMSVFIFIATL CCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHH IIVCTVAVIYNAFNISVAERINQFGVLRSIGATPGKIRKLVFKEAFIMSIIAIPIGILSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YLGIYTTIKLMSNSERFVFEGLKIGFYKEVILICIVLTLITIILSVLGPAIKASKVSPID HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHH AIRNSSNLKKEKIRRRKGRLIKLIFGIEGAVAYKNIRRNNKRFIITVFSLMISLIMFIII HHCCCCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH TSMTKMTDEVTKQLISSAPFDAVIQTKESMDEKFISEIKSKDGIKKVYTPKIRRALVYLE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH KDILNEKYYEKINKDMPKSEKIKGKDYVCLDQVTYSAYDKSSFEEVKNNLADGKIDTEAL HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHCCCCCCCHHEE NNNGVLLINRNEVSKKNGGRVVADITKYKVGDKIRIPRTKDKFYPQMGENKKLDLKGEFK CCCCEEEEECCCCCCCCCCEEEEEHHHCCCCCEEECCCCHHHCCCCCCCCCCCCCCCHHH QGVEKGDFIELTIVGILNKDIFNISAANNSIGLVFSDKCFEKNFGKLPIDAVAINYKNEK CCCCCCCEEEEEEEEECCCCCEEEEECCCCEEEEECCHHHHCCCCCCCEEEEEEECCCCC AGEKYAGYFEEKAEELQGSYMDLHSVNDQMDSIQKQIAVFMYGFIAIITIIGMVNIINTI CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIGLLLRKSEFATLTAIGMTKSQLNKMVMLEGLLHGIFTSVFGSIISYILYNFLLKQSFN HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FINFDIKFPIDVFITGILGVIAITLLASIIPLRRLKKMSIVENIRAKE EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA