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The map label for this gene is jag [H]

Identifier: 153935750

GI number: 153935750

Start: 3757952

End: 3758578

Strand: Reverse

Name: jag [H]

Synonym: CLC_3643

Alternate gene names: 153935750

Gene position: 3758578-3757952 (Counterclockwise)

Preceding gene: 153936249

Following gene: 153937169

Centisome position: 99.95

GC content: 28.07

Gene sequence:

>627_bases
ATGAAAGTTATTGAAATGACTGGGAAGACCATAGAAGAAGCCATTAATCACGGATTAAAGGAGTTAAATACTTCAAAAGA
TAAGGTAGAAATAAAAGTTATTGATGAAGGAAGCAAGGGATTTCTTAATTTTATAGGTACAAGACCTGCAAAAATAGAAA
TGAAGTTAAAAAAAGATTATGAAAAAGAAGTTAGAGATTTTTTAGAATCTATATTAAAAAGTATGGATGTAGAAGCTAAA
ATAAGTATAAAGGAAAAGAAAGATGTAATAAAAATAGATTTATCAGGGTCAGACATGGGCATAATCATAGGATATAGAGG
CGAAACTTTAGATTCTCTACAATATTTAGTTAGTCTTGTAATTAATAAAGATCAAAGTTGTGATTACAAAAGAGTTATAC
TAGATACAGAAAACTATAGAGATAAAAGGGAAGAAACATTAAAAAAATTAGCAAGAAGATTAGGCCATAAGGTAAGAGAA
ACTGGAAGACCAGTTAAATTAGAACCTATGAATCCTTATGAAAGAAGAATAATACATTCAGAACTTCAAAATAATAACTA
TGTTGAAACCTATAGTGAAGGTGAAGAGCCTTTTAGAAAAGTTGTAATAAATTTAAGGAAAGCCTAA

Upstream 100 bases:

>100_bases
ACTGGGTTATAAATAATTTAATTCAAATAATACAAACAGTTATAATGAAAAAAATGGAGTTAAGAGGTAAAGTTGAAGCC
TAGGGGGTGTGACTTGGGGA

Downstream 100 bases:

>100_bases
AGGCTTTCTTTTTATATTATTTGTAATTTGTAAAAAGAGGTGATTTTATGAAAGAATTTGATACTATAGCTGCTGTAGCA
ACACCAGTAGGAGAAGGTGG

Product: jag protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDYEKEVRDFLESILKSMDVEAK
ISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGHKVRE
TGRPVKLEPMNPYERRIIHSELQNNNYVETYSEGEEPFRKVVINLRKA

Sequences:

>Translated_208_residues
MKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDYEKEVRDFLESILKSMDVEAK
ISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGHKVRE
TGRPVKLEPMNPYERRIIHSELQNNNYVETYSEGEEPFRKVVINLRKA
>Mature_208_residues
MKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDYEKEVRDFLESILKSMDVEAK
ISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGHKVRE
TGRPVKLEPMNPYERRIIHSELQNNNYVETYSEGEEPFRKVVINLRKA

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 24150; Mature: 24150

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDY
CEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEHHHHHH
EKEVRDFLESILKSMDVEAKISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLV
HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
INKDQSCDYKRVILDTENYRDKREETLKKLARRLGHKVRETGRPVKLEPMNPYERRIIHS
HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH
ELQNNNYVETYSEGEEPFRKVVINLRKA
HHCCCCCEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDY
CEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEHHHHHH
EKEVRDFLESILKSMDVEAKISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLV
HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
INKDQSCDYKRVILDTENYRDKREETLKKLARRLGHKVRETGRPVKLEPMNPYERRIIHS
HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH
ELQNNNYVETYSEGEEPFRKVVINLRKA
HHCCCCCEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]