Click here to switch to the map view.

The map label for this gene is ygaK [H]

Identifier: 153935558

GI number: 153935558

Start: 274432

End: 275763

Strand: Direct

Name: ygaK [H]

Synonym: CLC_0293

Alternate gene names: 153935558

Gene position: 274432-275763 (Clockwise)

Preceding gene: 153934929

Following gene: 153936566

Centisome position: 7.3

GC content: 39.26

Gene sequence:

>1332_bases
ATGACGAAACTTACTGGCAGAATTGTTTTCCCGGATGATCCAAGTTATGATAATGCTCGAATGGATTATAATACGAGATT
CTCAAAGTATCCCTGCGCTATTGTTTTTTGCCAAGAGATCCAGGATGTAATTAATGCAGTTAAATGGGCAAGAAAGAACT
GTGTTCCAATACATACCCGCTGCGGAGGGCACAGTTATGAAGCTTTTTCAATATTGAATAATGGAATTGTTATAGATGTA
AGCGAAATGAATAAAGTACTTCTTGAGAAAGAGAATATGGAAGTAACTATCGAGGCTGGAGCTACCTTGCTGCCGATTTA
CAAGATTTTATGGGATAAAGGTGTTACTATTCCGGGAGGAACGTGCCCAACAGTTGGCATTGCCGGGATTACGCTGGGAG
GCGGATTTGGCATGCTTACAAGAAAGATGGGTATGCTTTGTGATAGCTTGATGGCAGTTGAGATGGTCAACGCAAGAGGG
AAAGTAGTATATGCTGACCGATGCGTTAATTCCGATCTTTTTTGGGCTTCCTGTGGAGGTGGGGGTGGAAACTTTGGGAT
AGTAACTTCATTTATTTTTAAGGTTCATCCTATTTCAAACGTAGCAGTTTATAATATTACGTGGGATTGGTCTGATGCTA
AAGAAATCATCAAGACATGGCAGGATTGGGCGCCATTTGTTGATGAACGATTGACATCAATTCTAGAGATATTCACCGAA
AAAGATGGCCGTATTTCTTCATCTGGCGAATTTCTAGGCCATGAAGACCAGCTGAGATGCTTACTAAGACCATTAACTTC
TGTGGGCAATCCTATTCAGATTGAAATTCAAACAATACCGTATATTGAAGCAGTAATAAAGTTTGATGGTGGGCCAGGCC
CTCATAAGTTCAAAAATACTGGGGCTTTTGTGTACCATAGGTTACCTGATAAGGCTATCGACACCCTACTTTGTTATATG
GGGATTTCCCCAAACAAAGATAACTCCATTCAATTTCAGAGCTTGGGAGGAGCAGTCAGGGACATTCTTCCAGATGAAAC
GGCCTATTTTCATCGTGAAGCAAGCTATATCATGCAATATATAACACATTGGAAAGTTGATAATGAAAAAAATCCTAACA
TCTTTTGGGTAGAAAAGCTCAGACAAGCCATGTTAAAATATGTGAACGGAACCTATGTCAATTGGCCTGATATCTTTATT
AAAGACTGGCCATGTGCATATTATGGTACCAATTATTATGAGCTTATGCGAATTAAAAGCAAATACGATCCGGAAAATAT
ATTCTACTTTGAACAGAGTATTCGTCCAGCCAAAAAAAGAAATTATAGATAA

Upstream 100 bases:

>100_bases
TAATAATTTATACTGACTTTAAAATTGTTATCAAACTTAAAATTGAAGTCATATATTATACAATAATGAATAAAAAAGAT
TATAAGGAGGTAGGGGTAAA

Downstream 100 bases:

>100_bases
TACACACAATAAAATAGGTTTAGTAGATAATGTAGAAAATTTTGCATTCACAGGCGCAGAAGTATATACAACTTTCAATG
ACCAAAGTTTAACTCTGTAT

Product: FAD-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTKLTGRIVFPDDPSYDNARMDYNTRFSKYPCAIVFCQEIQDVINAVKWARKNCVPIHTRCGGHSYEAFSILNNGIVIDV
SEMNKVLLEKENMEVTIEAGATLLPIYKILWDKGVTIPGGTCPTVGIAGITLGGGFGMLTRKMGMLCDSLMAVEMVNARG
KVVYADRCVNSDLFWASCGGGGGNFGIVTSFIFKVHPISNVAVYNITWDWSDAKEIIKTWQDWAPFVDERLTSILEIFTE
KDGRISSSGEFLGHEDQLRCLLRPLTSVGNPIQIEIQTIPYIEAVIKFDGGPGPHKFKNTGAFVYHRLPDKAIDTLLCYM
GISPNKDNSIQFQSLGGAVRDILPDETAYFHREASYIMQYITHWKVDNEKNPNIFWVEKLRQAMLKYVNGTYVNWPDIFI
KDWPCAYYGTNYYELMRIKSKYDPENIFYFEQSIRPAKKRNYR

Sequences:

>Translated_443_residues
MTKLTGRIVFPDDPSYDNARMDYNTRFSKYPCAIVFCQEIQDVINAVKWARKNCVPIHTRCGGHSYEAFSILNNGIVIDV
SEMNKVLLEKENMEVTIEAGATLLPIYKILWDKGVTIPGGTCPTVGIAGITLGGGFGMLTRKMGMLCDSLMAVEMVNARG
KVVYADRCVNSDLFWASCGGGGGNFGIVTSFIFKVHPISNVAVYNITWDWSDAKEIIKTWQDWAPFVDERLTSILEIFTE
KDGRISSSGEFLGHEDQLRCLLRPLTSVGNPIQIEIQTIPYIEAVIKFDGGPGPHKFKNTGAFVYHRLPDKAIDTLLCYM
GISPNKDNSIQFQSLGGAVRDILPDETAYFHREASYIMQYITHWKVDNEKNPNIFWVEKLRQAMLKYVNGTYVNWPDIFI
KDWPCAYYGTNYYELMRIKSKYDPENIFYFEQSIRPAKKRNYR
>Mature_442_residues
TKLTGRIVFPDDPSYDNARMDYNTRFSKYPCAIVFCQEIQDVINAVKWARKNCVPIHTRCGGHSYEAFSILNNGIVIDVS
EMNKVLLEKENMEVTIEAGATLLPIYKILWDKGVTIPGGTCPTVGIAGITLGGGFGMLTRKMGMLCDSLMAVEMVNARGK
VVYADRCVNSDLFWASCGGGGGNFGIVTSFIFKVHPISNVAVYNITWDWSDAKEIIKTWQDWAPFVDERLTSILEIFTEK
DGRISSSGEFLGHEDQLRCLLRPLTSVGNPIQIEIQTIPYIEAVIKFDGGPGPHKFKNTGAFVYHRLPDKAIDTLLCYMG
ISPNKDNSIQFQSLGGAVRDILPDETAYFHREASYIMQYITHWKVDNEKNPNIFWVEKLRQAMLKYVNGTYVNWPDIFIK
DWPCAYYGTNYYELMRIKSKYDPENIFYFEQSIRPAKKRNYR

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012951
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016168
- InterPro:   IPR006094 [H]

Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50372; Mature: 50241

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLTGRIVFPDDPSYDNARMDYNTRFSKYPCAIVFCQEIQDVINAVKWARKNCVPIHTR
CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEC
CGGHSYEAFSILNNGIVIDVSEMNKVLLEKENMEVTIEAGATLLPIYKILWDKGVTIPGG
CCCCCCHHHHEECCCEEEEHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCC
TCPTVGIAGITLGGGFGMLTRKMGMLCDSLMAVEMVNARGKVVYADRCVNSDLFWASCGG
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCC
GGGNFGIVTSFIFKVHPISNVAVYNITWDWSDAKEIIKTWQDWAPFVDERLTSILEIFTE
CCCCHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KDGRISSSGEFLGHEDQLRCLLRPLTSVGNPIQIEIQTIPYIEAVIKFDGGPGPHKFKNT
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCC
GAFVYHRLPDKAIDTLLCYMGISPNKDNSIQFQSLGGAVRDILPDETAYFHREASYIMQY
CEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEHHHCCHHHHHCCCCHHHHHHHHHHHHHH
ITHWKVDNEKNPNIFWVEKLRQAMLKYVNGTYVNWPDIFIKDWPCAYYGTNYYELMRIKS
HHHHCCCCCCCCCEEHHHHHHHHHHHHHCCCEECCCCEEEECCCCHHCCCCHHHHHEECC
KYDPENIFYFEQSIRPAKKRNYR
CCCCCCEEEEHHHCCCHHHCCCC
>Mature Secondary Structure 
TKLTGRIVFPDDPSYDNARMDYNTRFSKYPCAIVFCQEIQDVINAVKWARKNCVPIHTR
CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEC
CGGHSYEAFSILNNGIVIDVSEMNKVLLEKENMEVTIEAGATLLPIYKILWDKGVTIPGG
CCCCCCHHHHEECCCEEEEHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCC
TCPTVGIAGITLGGGFGMLTRKMGMLCDSLMAVEMVNARGKVVYADRCVNSDLFWASCGG
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCC
GGGNFGIVTSFIFKVHPISNVAVYNITWDWSDAKEIIKTWQDWAPFVDERLTSILEIFTE
CCCCHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KDGRISSSGEFLGHEDQLRCLLRPLTSVGNPIQIEIQTIPYIEAVIKFDGGPGPHKFKNT
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCC
GAFVYHRLPDKAIDTLLCYMGISPNKDNSIQFQSLGGAVRDILPDETAYFHREASYIMQY
CEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEHHHCCHHHHHCCCCHHHHHHHHHHHHHH
ITHWKVDNEKNPNIFWVEKLRQAMLKYVNGTYVNWPDIFIKDWPCAYYGTNYYELMRIKS
HHHHCCCCCCCCCEEHHHHHHHHHHHHHCCCEECCCCEEEECCCCHHCCCCHHHHHEECC
KYDPENIFYFEQSIRPAKKRNYR
CCCCCCEEEEHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202460; 9384377 [H]