Click here to switch to the map view.

The map label for this gene is 153935529

Identifier: 153935529

GI number: 153935529

Start: 2347126

End: 2347362

Strand: Reverse

Name: 153935529

Synonym: CLC_2218

Alternate gene names: NA

Gene position: 2347362-2347126 (Counterclockwise)

Preceding gene: 153936621

Following gene: 153937608

Centisome position: 62.42

GC content: 30.38

Gene sequence:

>237_bases
ATGAAAAATAAATTAAAACAGTTTCGTGAAAATTTAGGATTAACGCAAGAGCAATTAGGTGAACTTGTAGGTGTATCAAG
ACAAGCAATTAATGCTATTGAAACAGAAAAATTTGAACCATCTATTTGGTTGGCTTATGATATTGCCAAAGTATTCCATG
ACACTATAGAAGAAGTTTTCCTTTTTGAAGAAAGTGAAAGAAAATCAAGATCAGAGAAAAGTAGAGGTGTAGTTTAA

Upstream 100 bases:

>100_bases
GAGGGTTTATTTACTATATACTATGTAAGGTTTACTTGACACAAGGGTAAAGTAATACTATATTAATAATGTAATGTCAA
CATTAAAGGAGTGATACTTG

Downstream 100 bases:

>100_bases
ATGGCATTAAGACAAATTAGATTGTTTGATGATGAAATATTAAGAAAAGAGAGTAAGGTAGTTGAGATTGTAGACGATAA
AATAAGACAAATATTAAATG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLFEESERKSRSEKSRGVV

Sequences:

>Translated_78_residues
MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLFEESERKSRSEKSRGVV
>Mature_78_residues
MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLFEESERKSRSEKSRGVV

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 9072; Mature: 9072

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LFEESERKSRSEKSRGVV
HHCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LFEESERKSRSEKSRGVV
HHCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]