Click here to switch to the map view.

The map label for this gene is yfmM [H]

Identifier: 153935432

GI number: 153935432

Start: 804393

End: 805946

Strand: Direct

Name: yfmM [H]

Synonym: CLC_0777

Alternate gene names: 153935432

Gene position: 804393-805946 (Clockwise)

Preceding gene: 153937395

Following gene: 153935112

Centisome position: 21.39

GC content: 29.15

Gene sequence:

>1554_bases
ATGAGCATTTTAACAGTTGAAAGCATGAGTCATTCATTTGGAGATAGAATATTATTTAAAAATGTATCCTTTAGATTATT
AAAAGGAGAGCATATTGGTCTTGTTGGAGCTAATGGTGAAGGTAAGTCGACCTTTATGAAAATTATTACAAATGAAATTT
TAGTTGATGAAGGAACTATTGATTGGAATAGTAAATTTAGCATTGGATATATGGATCAATTGGTTGAATTAAAAGAAGGA
ATTACTGTATTCAATTTTTTAAAAAAGGCATTTATAAAGTTATTTGATATAGAGAATAAAATTAATGATTTATATAATAA
TCTTGGTAATATGGATAAAGCGAGAATGGATAAAACGTTAAACCAAATTGCAACCATGCAGGAGATTTTAGAGAAGAATG
ATTTTTACAGTATTAACTCTAAAATACAAGCAACTGTAGTTGGACTTGGGATTAAAGGGCTTTTAGATAGGGATGTTTCA
GCTTTAAGTGGAGGACAAAGAACTAAAATTTTACTTGCAAAACTACTTTTAGAGAAACCAGATATTTTACTACTAGATGA
GCCAACTAACTATTTAGATGAAGAACACATAGAATGGCTTAAAAGTTATTTAATAAATTATGAAGGTGCATTTATATTAA
TATCACATGATAATAGTTTTTTAAATAGTGTAGTAAATGTGATTTATCATCTTGAGCACAAAACCTTAACAAGATATGCA
GGAAACTATGATTATTTTCTTAAGATTTATGAAGTACGAAAAGAGCAGAGGTTAATTCAATATAAAGAGCAGCAAAACGA
GATTGCAAAGCTTGAAGATTATATAAGAAAAAATAAGGCAAGAGCTTCTACTGCAAAACAAGCTAAATCAAGAGAAAAAA
AGCTTGATAAAATTGAAAAAATAGAAATCAAAAAAGAAATCATAAAACCATATTTTAATTTTAAAAGTGTGAGAATGCCA
GAAAATATAATTTTCAATGCCAGTAATTTAATTATCGGATATAACAAACCATTAAGCAAACCTCTAAATTTAAAAATGAA
AAGAGGACAAAAAATTGCAATAACAGGTGCTAATGGAATAGGTAAAACTACTTTAATAAAAACTTTACTTGGACTTTTAA
AACCTATAAATGGTGAGGTGACTTTAAGCGATTATAAAAAGATAGGATATTTTGAACAGGAAATTATGGAAGATAATGCC
GGCTCAGTTTTATATGATGTTTGGAATGAGTTCCCTGATCTAACTCAAACAGAAGTAAGGAGTAGTCTTGCTAAATGTGG
GTTAACAAGGCAGCATATAGATAGCCCTATTAATATATTAAGTGGAGGAGAACAGGCTAAGGTTAGACTGTGCAAGTTAA
TCAATGAACCTAGCAATGTATTAGTCTTAGATGAACCTACAAATCACTTAGATATTTATGCAAAAAATGAGCTTAAGCAT
GCTTTAAAAGAGTATGATGGTAGCATAATTCTAGTATGCCATGAGCCAGAGTTTTATAAAGATATTGCAACGGATATATG
GAATTGTGAAGATTGGAGATGTTGTAGTGTGTAA

Upstream 100 bases:

>100_bases
ACCTCCTGTGCTCATAAACAGTACAGATTTATTTATGAACTTGGACTTAAGCCTTTGTGGTGTTATCATTCAATTAAAGG
ATACAAGGAGGTGTAGAGTT

Downstream 100 bases:

>100_bases
TGTAAGGATGAAATAATTCTTAGAAGAGCATAGATGATAAAATAAGTGTTAACATGTGAACTGATTAATAAGGATAATGA
GGCAGAGAGTAGTTCCCTAT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MSILTVESMSHSFGDRILFKNVSFRLLKGEHIGLVGANGEGKSTFMKIITNEILVDEGTIDWNSKFSIGYMDQLVELKEG
ITVFNFLKKAFIKLFDIENKINDLYNNLGNMDKARMDKTLNQIATMQEILEKNDFYSINSKIQATVVGLGIKGLLDRDVS
ALSGGQRTKILLAKLLLEKPDILLLDEPTNYLDEEHIEWLKSYLINYEGAFILISHDNSFLNSVVNVIYHLEHKTLTRYA
GNYDYFLKIYEVRKEQRLIQYKEQQNEIAKLEDYIRKNKARASTAKQAKSREKKLDKIEKIEIKKEIIKPYFNFKSVRMP
ENIIFNASNLIIGYNKPLSKPLNLKMKRGQKIAITGANGIGKTTLIKTLLGLLKPINGEVTLSDYKKIGYFEQEIMEDNA
GSVLYDVWNEFPDLTQTEVRSSLAKCGLTRQHIDSPINILSGGEQAKVRLCKLINEPSNVLVLDEPTNHLDIYAKNELKH
ALKEYDGSIILVCHEPEFYKDIATDIWNCEDWRCCSV

Sequences:

>Translated_517_residues
MSILTVESMSHSFGDRILFKNVSFRLLKGEHIGLVGANGEGKSTFMKIITNEILVDEGTIDWNSKFSIGYMDQLVELKEG
ITVFNFLKKAFIKLFDIENKINDLYNNLGNMDKARMDKTLNQIATMQEILEKNDFYSINSKIQATVVGLGIKGLLDRDVS
ALSGGQRTKILLAKLLLEKPDILLLDEPTNYLDEEHIEWLKSYLINYEGAFILISHDNSFLNSVVNVIYHLEHKTLTRYA
GNYDYFLKIYEVRKEQRLIQYKEQQNEIAKLEDYIRKNKARASTAKQAKSREKKLDKIEKIEIKKEIIKPYFNFKSVRMP
ENIIFNASNLIIGYNKPLSKPLNLKMKRGQKIAITGANGIGKTTLIKTLLGLLKPINGEVTLSDYKKIGYFEQEIMEDNA
GSVLYDVWNEFPDLTQTEVRSSLAKCGLTRQHIDSPINILSGGEQAKVRLCKLINEPSNVLVLDEPTNHLDIYAKNELKH
ALKEYDGSIILVCHEPEFYKDIATDIWNCEDWRCCSV
>Mature_516_residues
SILTVESMSHSFGDRILFKNVSFRLLKGEHIGLVGANGEGKSTFMKIITNEILVDEGTIDWNSKFSIGYMDQLVELKEGI
TVFNFLKKAFIKLFDIENKINDLYNNLGNMDKARMDKTLNQIATMQEILEKNDFYSINSKIQATVVGLGIKGLLDRDVSA
LSGGQRTKILLAKLLLEKPDILLLDEPTNYLDEEHIEWLKSYLINYEGAFILISHDNSFLNSVVNVIYHLEHKTLTRYAG
NYDYFLKIYEVRKEQRLIQYKEQQNEIAKLEDYIRKNKARASTAKQAKSREKKLDKIEKIEIKKEIIKPYFNFKSVRMPE
NIIFNASNLIIGYNKPLSKPLNLKMKRGQKIAITGANGIGKTTLIKTLLGLLKPINGEVTLSDYKKIGYFEQEIMEDNAG
SVLYDVWNEFPDLTQTEVRSSLAKCGLTRQHIDSPINILSGGEQAKVRLCKLINEPSNVLVLDEPTNHLDIYAKNELKHA
LKEYDGSIILVCHEPEFYKDIATDIWNCEDWRCCSV

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=516, Percent_Identity=28.1007751937984, Blast_Score=216, Evalue=6e-56,
Organism=Homo sapiens, GI10947137, Length=516, Percent_Identity=29.4573643410853, Blast_Score=196, Evalue=6e-50,
Organism=Homo sapiens, GI27881506, Length=516, Percent_Identity=29.4573643410853, Blast_Score=196, Evalue=6e-50,
Organism=Homo sapiens, GI10947135, Length=531, Percent_Identity=30.1318267419962, Blast_Score=196, Evalue=6e-50,
Organism=Homo sapiens, GI69354671, Length=531, Percent_Identity=30.1318267419962, Blast_Score=196, Evalue=6e-50,
Organism=Homo sapiens, GI108773784, Length=213, Percent_Identity=30.9859154929577, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI108773782, Length=213, Percent_Identity=30.9859154929577, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789751, Length=518, Percent_Identity=32.6254826254826, Blast_Score=270, Evalue=1e-73,
Organism=Escherichia coli, GI1787041, Length=513, Percent_Identity=33.5282651072125, Blast_Score=269, Evalue=3e-73,
Organism=Escherichia coli, GI1787182, Length=519, Percent_Identity=30.635838150289, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI2367384, Length=506, Percent_Identity=30.2371541501976, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1788165, Length=285, Percent_Identity=24.9122807017544, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787758, Length=170, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788225, Length=194, Percent_Identity=26.8041237113402, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788897, Length=198, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=520, Percent_Identity=29.8076923076923, Blast_Score=221, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI17553372, Length=521, Percent_Identity=30.1343570057582, Blast_Score=207, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17559834, Length=535, Percent_Identity=27.2897196261682, Blast_Score=193, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=30.8712121212121, Blast_Score=213, Evalue=5e-56,
Organism=Saccharomyces cerevisiae, GI6321121, Length=524, Percent_Identity=30.1526717557252, Blast_Score=204, Evalue=4e-53,
Organism=Saccharomyces cerevisiae, GI6325030, Length=390, Percent_Identity=28.2051282051282, Blast_Score=130, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6324314, Length=388, Percent_Identity=25.7731958762887, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6323278, Length=386, Percent_Identity=27.2020725388601, Blast_Score=119, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24666836, Length=518, Percent_Identity=31.4671814671815, Blast_Score=234, Evalue=2e-61,
Organism=Drosophila melanogaster, GI24641342, Length=529, Percent_Identity=29.6786389413989, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI24642252, Length=519, Percent_Identity=30.2504816955684, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI18859989, Length=519, Percent_Identity=30.2504816955684, Blast_Score=209, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59215; Mature: 59084

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILTVESMSHSFGDRILFKNVSFRLLKGEHIGLVGANGEGKSTFMKIITNEILVDEGTI
CCEEEEEHHHHHHCCEEEEECCCEEEEECCEEEEEECCCCCHHHHHHHHHHHHEEECCCC
DWNSKFSIGYMDQLVELKEGITVFNFLKKAFIKLFDIENKINDLYNNLGNMDKARMDKTL
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NQIATMQEILEKNDFYSINSKIQATVVGLGIKGLLDRDVSALSGGQRTKILLAKLLLEKP
HHHHHHHHHHHCCCCEEECCEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
DILLLDEPTNYLDEEHIEWLKSYLINYEGAFILISHDNSFLNSVVNVIYHLEHKTLTRYA
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHC
GNYDYFLKIYEVRKEQRLIQYKEQQNEIAKLEDYIRKNKARASTAKQAKSREKKLDKIEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEIKKEIIKPYFNFKSVRMPENIIFNASNLIIGYNKPLSKPLNLKMKRGQKIAITGANGI
HHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCEECCCCEEEEECCCCC
GKTTLIKTLLGLLKPINGEVTLSDYKKIGYFEQEIMEDNAGSVLYDVWNEFPDLTQTEVR
CHHHHHHHHHHHHCCCCCCEEEHHHHHHCHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHH
SSLAKCGLTRQHIDSPINILSGGEQAKVRLCKLINEPSNVLVLDEPTNHLDIYAKNELKH
HHHHHCCCCHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHHH
ALKEYDGSIILVCHEPEFYKDIATDIWNCEDWRCCSV
HHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure 
SILTVESMSHSFGDRILFKNVSFRLLKGEHIGLVGANGEGKSTFMKIITNEILVDEGTI
CEEEEEHHHHHHCCEEEEECCCEEEEECCEEEEEECCCCCHHHHHHHHHHHHEEECCCC
DWNSKFSIGYMDQLVELKEGITVFNFLKKAFIKLFDIENKINDLYNNLGNMDKARMDKTL
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NQIATMQEILEKNDFYSINSKIQATVVGLGIKGLLDRDVSALSGGQRTKILLAKLLLEKP
HHHHHHHHHHHCCCCEEECCEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
DILLLDEPTNYLDEEHIEWLKSYLINYEGAFILISHDNSFLNSVVNVIYHLEHKTLTRYA
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHC
GNYDYFLKIYEVRKEQRLIQYKEQQNEIAKLEDYIRKNKARASTAKQAKSREKKLDKIEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEIKKEIIKPYFNFKSVRMPENIIFNASNLIIGYNKPLSKPLNLKMKRGQKIAITGANGI
HHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCEECCCCEEEEECCCCC
GKTTLIKTLLGLLKPINGEVTLSDYKKIGYFEQEIMEDNAGSVLYDVWNEFPDLTQTEVR
CHHHHHHHHHHHHCCCCCCEEEHHHHHHCHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHH
SSLAKCGLTRQHIDSPINILSGGEQAKVRLCKLINEPSNVLVLDEPTNHLDIYAKNELKH
HHHHHCCCCHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHHH
ALKEYDGSIILVCHEPEFYKDIATDIWNCEDWRCCSV
HHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]