Click here to switch to the map view.

The map label for this gene is yvrC [H]

Identifier: 153935323

GI number: 153935323

Start: 348128

End: 349159

Strand: Direct

Name: yvrC [H]

Synonym: CLC_0360

Alternate gene names: 153935323

Gene position: 348128-349159 (Clockwise)

Preceding gene: 153935953

Following gene: 153936012

Centisome position: 9.26

GC content: 30.81

Gene sequence:

>1032_bases
ATGTTAAAAAAGTGTGTAGCATTATTTATAGGAGTTATTTTTATTTTAGGGCTAGTAGGTTGCTCTCAATCTACACAAGG
ACAGAATGGAAAAGGGAAAACTATAGGTGAACAGGAACAAAAACAAAATAAATCTAAAAGTAATTATCCTGTAAATATTA
AGGTTTATACTGATGAGGGAAAAGAGATAGTACAAACCATACAAAAAGAGCCTAAGAGAGTGGTGATAATGGGACAATCT
ATGGCTGAATTAATGATTAAATTTGGATTACAAGATAAAGTTGTTGGGGTAGGATATCTTGATAAATCTTTTTCAAAATA
TGATGATGAAATATCTAAGATGCCAATTATTGCAAAATCATGGCCTTCTAAAGAAGCAATAATTGCTTTGAAGCCTGATA
TTATTTATTCTATGTCTTCAGCCTTTAAAGAAGATAGAGTAGGTGACATTTACTCTTGGAATGATAGAGGTATTCCAGTT
CTTCCAGCGGTAAATTTTACGATAGGACGAAGCATTGATGAATACTTTAAAGATATTAAGAATTTTGGATTAGCTTTTAA
CATTGAAAATGAGACAAATAAGTATTTAAAAGAACAAAAGGATAGAATGGATAAAGTTAAAGAAGTAGCTAAAAAAGCAA
AAACTACCCCAAATGTATTACTTGTGGCAAGTGCTGGACGTGAAAATTATGATTATTATCCGCCATCAGGGTGCATAATT
GATGAAGTAATTGAAGGTGCAGGTGGAAAATATATAGAATTATCAAAGGATTCATATATGGAAATGTCAATTGAGTCAAT
TATTGCTGCAAATCCAGAAAAAATAATTATAACTGAATTCCAAGGTTCTGATAGGGAAAAGATAAAAAATAAAATACTTT
CTAATAAAAGACTTCAAAATGTTATTGCAATAAAGACAGGTAATGTGATGGTTGTAGACTACACCAATGCAATACGTGGA
AGCCTTGAACTTTCAGATTTGTATGAAGATGTTGCAAAATTTATTCATCCTGAACTATTTGGAGGAAATTAG

Upstream 100 bases:

>100_bases
AGTGACTACATCAATATAGATAATATGAATTTTTTTGTATTATAGTTCTTAAGAAGAAATAAAATTTTTGTAGGTACTAG
AATACATAAGGAGGTAAAAA

Downstream 100 bases:

>100_bases
TTATGTTACAAACAGGAAAAGTAGGAGTAGCAGAATCCAATGCAGAGAATTATGGATGTACTTTTAAAAAACATTCTCTG
TTTACTACAATAATTATTGG

Product: iron chelate ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MLKKCVALFIGVIFILGLVGCSQSTQGQNGKGKTIGEQEQKQNKSKSNYPVNIKVYTDEGKEIVQTIQKEPKRVVIMGQS
MAELMIKFGLQDKVVGVGYLDKSFSKYDDEISKMPIIAKSWPSKEAIIALKPDIIYSMSSAFKEDRVGDIYSWNDRGIPV
LPAVNFTIGRSIDEYFKDIKNFGLAFNIENETNKYLKEQKDRMDKVKEVAKKAKTTPNVLLVASAGRENYDYYPPSGCII
DEVIEGAGGKYIELSKDSYMEMSIESIIAANPEKIIITEFQGSDREKIKNKILSNKRLQNVIAIKTGNVMVVDYTNAIRG
SLELSDLYEDVAKFIHPELFGGN

Sequences:

>Translated_343_residues
MLKKCVALFIGVIFILGLVGCSQSTQGQNGKGKTIGEQEQKQNKSKSNYPVNIKVYTDEGKEIVQTIQKEPKRVVIMGQS
MAELMIKFGLQDKVVGVGYLDKSFSKYDDEISKMPIIAKSWPSKEAIIALKPDIIYSMSSAFKEDRVGDIYSWNDRGIPV
LPAVNFTIGRSIDEYFKDIKNFGLAFNIENETNKYLKEQKDRMDKVKEVAKKAKTTPNVLLVASAGRENYDYYPPSGCII
DEVIEGAGGKYIELSKDSYMEMSIESIIAANPEKIIITEFQGSDREKIKNKILSNKRLQNVIAIKTGNVMVVDYTNAIRG
SLELSDLYEDVAKFIHPELFGGN
>Mature_343_residues
MLKKCVALFIGVIFILGLVGCSQSTQGQNGKGKTIGEQEQKQNKSKSNYPVNIKVYTDEGKEIVQTIQKEPKRVVIMGQS
MAELMIKFGLQDKVVGVGYLDKSFSKYDDEISKMPIIAKSWPSKEAIIALKPDIIYSMSSAFKEDRVGDIYSWNDRGIPV
LPAVNFTIGRSIDEYFKDIKNFGLAFNIENETNKYLKEQKDRMDKVKEVAKKAKTTPNVLLVASAGRENYDYYPPSGCII
DEVIEGAGGKYIELSKDSYMEMSIESIIAANPEKIIITEFQGSDREKIKNKILSNKRLQNVIAIKTGNVMVVDYTNAIRG
SLELSDLYEDVAKFIHPELFGGN

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 38420; Mature: 38420

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKCVALFIGVIFILGLVGCSQSTQGQNGKGKTIGEQEQKQNKSKSNYPVNIKVYTDEG
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCC
KEIVQTIQKEPKRVVIMGQSMAELMIKFGLQDKVVGVGYLDKSFSKYDDEISKMPIIAKS
HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCEEECC
WPSKEAIIALKPDIIYSMSSAFKEDRVGDIYSWNDRGIPVLPAVNFTIGRSIDEYFKDIK
CCCCCEEEEECCHHHHHHHHHHHHCCCCCCEECCCCCCEEECCCCHHHCCCHHHHHHHHH
NFGLAFNIENETNKYLKEQKDRMDKVKEVAKKAKTTPNVLLVASAGRENYDYYPPSGCII
HCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHH
DEVIEGAGGKYIELSKDSYMEMSIESIIAANPEKIIITEFQGSDREKIKNKILSNKRLQN
HHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHH
VIAIKTGNVMVVDYTNAIRGSLELSDLYEDVAKFIHPELFGGN
EEEEECCCEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLKKCVALFIGVIFILGLVGCSQSTQGQNGKGKTIGEQEQKQNKSKSNYPVNIKVYTDEG
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCC
KEIVQTIQKEPKRVVIMGQSMAELMIKFGLQDKVVGVGYLDKSFSKYDDEISKMPIIAKS
HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCEEECC
WPSKEAIIALKPDIIYSMSSAFKEDRVGDIYSWNDRGIPVLPAVNFTIGRSIDEYFKDIK
CCCCCEEEEECCHHHHHHHHHHHHCCCCCCEECCCCCCEEECCCCHHHCCCHHHHHHHHH
NFGLAFNIENETNKYLKEQKDRMDKVKEVAKKAKTTPNVLLVASAGRENYDYYPPSGCII
HCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHH
DEVIEGAGGKYIELSKDSYMEMSIESIIAANPEKIIITEFQGSDREKIKNKILSNKRLQN
HHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHH
VIAIKTGNVMVVDYTNAIRGSLELSDLYEDVAKFIHPELFGGN
EEEEECCCEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]