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The map label for this gene is rbcR [H]

Identifier: 153935300

GI number: 153935300

Start: 717827

End: 718702

Strand: Direct

Name: rbcR [H]

Synonym: CLC_0700

Alternate gene names: 153935300

Gene position: 717827-718702 (Clockwise)

Preceding gene: 153936740

Following gene: 153935551

Centisome position: 19.09

GC content: 29.91

Gene sequence:

>876_bases
ATGATAAGTAAATTAGACTTATATAGAGTATTTGGTTGTGTGGGAAAGTGCAAAAGCTTTTCAAAGGCAGCTAAGGAGTT
ATATATGACACAACCGGCCGTAAGCCAATCCATAATGCAATTAGAAAAGGAATTAGATATAAGACTTTTTACACGAACTC
CTAAAGGAGTTATTTTAACTAATGAAGGTGAAATTTTATTTGAATATGTAACTTCTGCTATAAGTTTAATAGAAGCAGGA
GAAAAAAAGATGTCAGATTCAAAAAATCTTATGATAGGAGATCTAAAAATAGGGGTAGGAGATACTACTTCTAAGTATTT
TCTACTATCTTATTTAGAAAAATTTCATATAAAATATCCAAATGTAAAATTAAAAATATTAAATGGGACTACTGTAGAGT
TGTGCAACTTAGTTAAAACGGGAGATATTGATTTGGCCATCTGTAACTTACCAATAGAAGATTCTGCTTTGGAATTTAAG
AAGTGTATGGAAATACAGGACATATTTGTTTGTGGGGAAAAGTTTAACAAAACTATATCCAAGCCTTTAAATTTTGTAGA
AATCTCAAAAATGCCCCTTATATTATTAGATGGCAAATCTAACTCAAGACAATATGTAGAAAACTATTTATTGTCAAAGG
GAGTTAATATTAGCCCAGAAATAGAACTTGGTGCTCATGATTTATTATTACAATTTGCAAAGATAAATCTAGGAATAGCC
TGTGTTGTAAAGGAATTTTCATTAGAATACTTAGAAAAAGAAATTTTGTTTGAGGTAAAGACTAAAGAGCCTATCCCTAA
GCGTAATATAGGCTTTTGTTATTTAAAAAGTGTATCACTATCTCCAGCGGCAAGAACATTTTTAGAAACTCTATAA

Upstream 100 bases:

>100_bases
AAATTTTGAATTAAAATTACTTCCTATACTTGTAATATACAACATTTTTATGGTATAAGTAAAATAAATAGTATATATAG
TGGGTATAAGGAGGGGTTAT

Downstream 100 bases:

>100_bases
AACTCTGCCTTTTATTCAAATGTTATTAAATATAGGGTATACTATAAATAAATTAAATATTGATTTAAACGCTAGAAAAA
ATAGATTGGCAAAGAATAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MISKLDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILTNEGEILFEYVTSAISLIEAG
EKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYPNVKLKILNGTTVELCNLVKTGDIDLAICNLPIEDSALEFK
KCMEIQDIFVCGEKFNKTISKPLNFVEISKMPLILLDGKSNSRQYVENYLLSKGVNISPEIELGAHDLLLQFAKINLGIA
CVVKEFSLEYLEKEILFEVKTKEPIPKRNIGFCYLKSVSLSPAARTFLETL

Sequences:

>Translated_291_residues
MISKLDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILTNEGEILFEYVTSAISLIEAG
EKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYPNVKLKILNGTTVELCNLVKTGDIDLAICNLPIEDSALEFK
KCMEIQDIFVCGEKFNKTISKPLNFVEISKMPLILLDGKSNSRQYVENYLLSKGVNISPEIELGAHDLLLQFAKINLGIA
CVVKEFSLEYLEKEILFEVKTKEPIPKRNIGFCYLKSVSLSPAARTFLETL
>Mature_291_residues
MISKLDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILTNEGEILFEYVTSAISLIEAG
EKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYPNVKLKILNGTTVELCNLVKTGDIDLAICNLPIEDSALEFK
KCMEIQDIFVCGEKFNKTISKPLNFVEISKMPLILLDGKSNSRQYVENYLLSKGVNISPEIELGAHDLLLQFAKINLGIA
CVVKEFSLEYLEKEILFEVKTKEPIPKRNIGFCYLKSVSLSPAARTFLETL

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=211, Percent_Identity=25.5924170616114, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787601, Length=171, Percent_Identity=30.4093567251462, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788748, Length=283, Percent_Identity=22.2614840989399, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=24.3986254295533, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788481, Length=282, Percent_Identity=23.4042553191489, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786401, Length=210, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787128, Length=134, Percent_Identity=34.3283582089552, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790208, Length=294, Percent_Identity=23.1292517006803, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786448, Length=128, Percent_Identity=30.46875, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787879, Length=288, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=246, Percent_Identity=23.1707317073171, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789639, Length=173, Percent_Identity=26.0115606936416, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=175, Percent_Identity=29.7142857142857, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787530, Length=233, Percent_Identity=24.0343347639485, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789173, Length=144, Percent_Identity=31.9444444444444, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788296, Length=230, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787589, Length=117, Percent_Identity=29.9145299145299, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=144, Percent_Identity=25.6944444444444, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082132, Length=277, Percent_Identity=22.3826714801444, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32769; Mature: 32769

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKLDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCEEEE
NEGEILFEYVTSAISLIEAGEKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYP
CCCCHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCEECC
NVKLKILNGTTVELCNLVKTGDIDLAICNLPIEDSALEFKKCMEIQDIFVCGEKFNKTIS
CEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
KPLNFVEISKMPLILLDGKSNSRQYVENYLLSKGVNISPEIELGAHDLLLQFAKINLGIA
CCCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHCCCCE
CVVKEFSLEYLEKEILFEVKTKEPIPKRNIGFCYLKSVSLSPAARTFLETL
EHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHC
>Mature Secondary Structure
MISKLDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCEEEE
NEGEILFEYVTSAISLIEAGEKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYP
CCCCHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCEECC
NVKLKILNGTTVELCNLVKTGDIDLAICNLPIEDSALEFKKCMEIQDIFVCGEKFNKTIS
CEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
KPLNFVEISKMPLILLDGKSNSRQYVENYLLSKGVNISPEIELGAHDLLLQFAKINLGIA
CCCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHCCCCE
CVVKEFSLEYLEKEILFEVKTKEPIPKRNIGFCYLKSVSLSPAARTFLETL
EHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]