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The map label for this gene is rimM

Identifier: 153935028

GI number: 153935028

Start: 2423457

End: 2423951

Strand: Reverse

Name: rimM

Synonym: CLC_2294

Alternate gene names: 153935028

Gene position: 2423951-2423457 (Counterclockwise)

Preceding gene: 153936128

Following gene: 153935798

Centisome position: 64.46

GC content: 28.69

Gene sequence:

>495_bases
ATGAAAGAGTTTCTAGCGGTAGGAGAAATAATAAATACTCATGGTATAAAGGGAGAGGTAAAAGTATATCCTTTAACTGA
TGATATGAAAAGATTTAAAAAATTAAAAGAAGTATTTATAGATGGAGAGGAAAAAAAAATATTATCCTGTAAGCTTCAAC
CTAATAATGTAGTTTTAAAAATAGAAGGCATAGATTCTATAGAAGAGGCTAATAAGTATAGAAAAAAGCTTCTAGAAATT
AAAAGAGAAAATTCTGTAAAGCTTCCAAAAGGAAGTTATTTTATAGCAGATTTAATAGAATGTAGAGTTATAGATGAAGA
TGGGAGAGAAATAGGACAAATATCTGATGTAATAAAGACTGGCAGTAATGATGTATATGAGGTAAAAGGAAAGAGCGAGG
TATTAGTACCAGCCATAAAAGATATAGTTACAAATATAGATATAGAAAACAAAACTGTAACTATAAAACCTTTGGAGATA
TGGCAATGCGAATAG

Upstream 100 bases:

>100_bases
CACCTAACTCTTTTTTATATATAATATATTTTCATACTGTTGAATTTATAAAAGAAAAATGGGAATAATTATAATATAAT
GGTTAGAGGAGAGAAGATAT

Downstream 100 bases:

>100_bases
ATGTGCTAACATTATTTCCAGAAATGTTTTCTATATTTAATCACAGCATAATAGGAAGAGCTATAGAAAAGGAAATTTTA
AAAATAAACACTGTAAATAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEEKKILSCKLQPNNVVLKIEGIDSIEEANKYRKKLLEI
KRENSVKLPKGSYFIADLIECRVIDEDGREIGQISDVIKTGSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEI
WQCE

Sequences:

>Translated_164_residues
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEEKKILSCKLQPNNVVLKIEGIDSIEEANKYRKKLLEI
KRENSVKLPKGSYFIADLIECRVIDEDGREIGQISDVIKTGSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEI
WQCE
>Mature_164_residues
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEEKKILSCKLQPNNVVLKIEGIDSIEEANKYRKKLLEI
KRENSVKLPKGSYFIADLIECRVIDEDGREIGQISDVIKTGSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEI
WQCE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=163, Percent_Identity=23.9263803680982, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CLOB1 (A7FW10)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384621.1
- ProteinModelPortal:   A7FW10
- SMR:   A7FW10
- STRING:   A7FW10
- GeneID:   5394811
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_2310
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   NDVYWIK
- ProtClustDB:   PRK00122
- BioCyc:   CBOT441770:CLB_2310-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18678; Mature: 18678

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEEKKILSCKLQPNNVVLK
CCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEE
IEGIDSIEEANKYRKKLLEIKRENSVKLPKGSYFIADLIECRVIDEDGREIGQISDVIKT
EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEHEEEEEECCCCHHHHHHHHHHHC
GSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEIWQCE
CCCCEEEECCCCEEEHHHHHHHHHCCCCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEEKKILSCKLQPNNVVLK
CCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEE
IEGIDSIEEANKYRKKLLEIKRENSVKLPKGSYFIADLIECRVIDEDGREIGQISDVIKT
EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEHEEEEEECCCCHHHHHHHHHHHC
GSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEIWQCE
CCCCEEEECCCCEEEHHHHHHHHHCCCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA