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The map label for this gene is dapA [H]

Identifier: 153934913

GI number: 153934913

Start: 3227972

End: 3228850

Strand: Direct

Name: dapA [H]

Synonym: CLC_3062

Alternate gene names: 153934913

Gene position: 3227972-3228850 (Clockwise)

Preceding gene: 153937470

Following gene: 153934891

Centisome position: 85.84

GC content: 30.38

Gene sequence:

>879_bases
ATGAGTATTTTTAAAGGTTCTGGAGTAGCTATAATAACTCCTTTTACTAACACAGGGGTAGATTTTGACAAGCTTTCTGA
ACTAATAGAATGGCATATAAAATCCAAAACTGATGCTATAATAGTTTGCGGAACTACTGGTGAGGCAACTACAATGACAG
AAACTGAAAGAAAAGAAACTATAAAGTTCGTAATAGATAAAGTAAATAAAAGAATTCCTGTTATAGCTGGTACTGGTAGT
AATAATACTGCCGCCTCCATCGCTATGAGTAAATGGGCAGAAAGTATAGGAGTAGATGGATTGTTAGTAATAACTCCATA
TTATAATAAAACAACACAAAAAGGCTTAGTTAAGCATTTTAAAGCCGTTTCTGATGCTGTTAGCACTCCTATAATTATAT
ATAATGTTCCTGGAAGAACAGGACTTAATATAACCCCTGGTACTTTAAAAGAGTTATGCGAAGATAAAAACATAGTAGCT
GTAAAAGAAGCTAGTGGAAATATAAGTCAAATAGCTCAAATTAAAGCTTTATGTGGTGACAAATTAGATATATATTCTGG
AAACGATGATCAAATAATTCCTATATTAGCTCTTGGAGGAATAGGTGTTATCTCTGTATTAGCTAATGTAATTCCAGAGG
ATGTTCATAATATGTGTGAATTATATTTAAACGGTAAGGTTAATGAAGCTTTAAAAATTCAATTAGATTCTTTAGCTCTT
ACTAATGCTTTATTTATAGAAACAAATCCTATACCAGTAAAAACAGCAATGAATCTTATGAACATGAAGGTAGGAGATTT
AAGACTCCCTTTATGTGAAATGAATGAAAATAATTTAGAAATATTAAAGAAAGAATTAAAAGCTTATAACTTAATGTAA

Upstream 100 bases:

>100_bases
GTAGTAGCAGATAATATTAGAAAAGGTGCTGCACTTAACGCAATTCAAATAGCTGAGCATATAATAAAAAGTAAATAAGT
AAACTTTAGGAGGTATTTTT

Downstream 100 bases:

>100_bases
TATAAAGTGTAGAGTTTATCTCTACACTTTACTATTAAGATATCTAATAAAATAAATTTAGTTTATCCGATGACTACCCG
CTCTAATACTCCCATCTTCT

Product: dihydrodipicolinate synthase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSIFKGSGVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGS
NNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVA
VKEASGNISQIAQIKALCGDKLDIYSGNDDQIIPILALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLAL
TNALFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEILKKELKAYNLM

Sequences:

>Translated_292_residues
MSIFKGSGVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGS
NNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVA
VKEASGNISQIAQIKALCGDKLDIYSGNDDQIIPILALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLAL
TNALFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEILKKELKAYNLM
>Mature_291_residues
SIFKGSGVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSN
NTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAV
KEASGNISQIAQIKALCGDKLDIYSGNDDQIIPILALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLALT
NALFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEILKKELKAYNLM

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; first step. [C]

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=281, Percent_Identity=28.4697508896797, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI13540533, Length=304, Percent_Identity=23.6842105263158, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI1788823, Length=292, Percent_Identity=41.7808219178082, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI1786463, Length=237, Percent_Identity=32.4894514767932, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI87082415, Length=276, Percent_Identity=26.4492753623188, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789620, Length=273, Percent_Identity=26.3736263736264, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: 840 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 31651; Mature: 31520

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00583 PFKB_KINASES_1 ; PS00665 DHDPS_1 ; PS00666 DHDPS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFKGSGVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKET
CCEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
IKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHF
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
KAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVKEASGNISQIAQIKALCGD
HHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC
KLDIYSGNDDQIIPILALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLAL
CEEEECCCCCCEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCEEE
TNALFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEILKKELKAYNLM
EEEEEEECCCCCHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIFKGSGVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKET
CEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
IKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHF
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
KAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVKEASGNISQIAQIKALCGD
HHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC
KLDIYSGNDDQIIPILALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLAL
CEEEECCCCCCEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCEEE
TNALFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEILKKELKAYNLM
EEEEEEECCCCCHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA