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The map label for this gene is 153934872

Identifier: 153934872

GI number: 153934872

Start: 2045002

End: 2045757

Strand: Direct

Name: 153934872

Synonym: CLC_1929

Alternate gene names: NA

Gene position: 2045002-2045757 (Clockwise)

Preceding gene: 153936014

Following gene: 153935795

Centisome position: 54.38

GC content: 24.21

Gene sequence:

>756_bases
ATGGACTGTATAAATTTTAATGAATTTAAATTGGCAAAAAAAAGCGTGAAAAGAAACAAATGTGAAAGTAATGCAGAAAA
ATTTTTTTCTAATGCTTATTATTCTTCCAATATAAAAGACAAAATTAAATTTTACACCATTTCAATAAAATTAAAACCTT
CTTTTATAGATGCTTATTTTAATAGAGCTGAATTATATAAAGAATTAGAAGAATATAATAAATCTATAGAGGATTATAAT
AAAATTTTAGAATTAAATCCTAAAGATAAAGATTGTTACAATAATAGAGCTATTGTGTATTATCTAATAAAAAATTATGA
TAAATCACTGCAGGACCTAGATGTATTAGTTTCCATGGATAAACATTATAAAAACATATATTTTAATAGGGGTATGGTTT
TCCTAGGAATAGAAGATTATAAGAGAGCAGCCATTGAATTTACAAAGGCTATACATGAAGATTCGAGAGATAGTGAAGCA
TACGAAAATAGAGCGCTTGCTTACTATAATTTAAAAAAATATTCTCCTTCTATAAAAGACTATACCAATGCTCTTAAACT
AACACCCGACAATAAAAATATTTACTTAAATAGAGGAACCGTATACTATAAAATAAAAAACTATGAAAATGCTATATCTG
ACTATATGAAAGCTTTAGATTTCAAAGAAAAAGACCCTTCTTTTTATCATAAGATTTACACTAATTGTAATGATAAGCTT
AATAAAAAAATTGTACCCTTTGTTAATTTGAAATAA

Upstream 100 bases:

>100_bases
ACTATAGTTATTTTATATATTAAAACATTCTATTATCCTTATATAAAAATATGCATAGAATAAAGTTGAGTATAGAATTT
TTTGGAGGATTTGTTTAATT

Downstream 100 bases:

>100_bases
CATAGTACATGGAAAAGGTTTTAATGTAACTATGCCCTAATAACAATATAACTGTTATAATAAACCTTTATTAATATTTT
GGCAGATTCTTATGGAGCAC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDCINFNEFKLAKKSVKRNKCESNAEKFFSNAYYSSNIKDKIKFYTISIKLKPSFIDAYFNRAELYKELEEYNKSIEDYN
KILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMDKHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDSRDSEA
YENRALAYYNLKKYSPSIKDYTNALKLTPDNKNIYLNRGTVYYKIKNYENAISDYMKALDFKEKDPSFYHKIYTNCNDKL
NKKIVPFVNLK

Sequences:

>Translated_251_residues
MDCINFNEFKLAKKSVKRNKCESNAEKFFSNAYYSSNIKDKIKFYTISIKLKPSFIDAYFNRAELYKELEEYNKSIEDYN
KILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMDKHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDSRDSEA
YENRALAYYNLKKYSPSIKDYTNALKLTPDNKNIYLNRGTVYYKIKNYENAISDYMKALDFKEKDPSFYHKIYTNCNDKL
NKKIVPFVNLK
>Mature_251_residues
MDCINFNEFKLAKKSVKRNKCESNAEKFFSNAYYSSNIKDKIKFYTISIKLKPSFIDAYFNRAELYKELEEYNKSIEDYN
KILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMDKHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDSRDSEA
YENRALAYYNLKKYSPSIKDYTNALKLTPDNKNIYLNRGTVYYKIKNYENAISDYMKALDFKEKDPSFYHKIYTNCNDKL
NKKIVPFVNLK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI310123097, Length=199, Percent_Identity=26.1306532663317, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI310131789, Length=199, Percent_Identity=26.1306532663317, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI310110582, Length=199, Percent_Identity=26.1306532663317, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115532690, Length=237, Percent_Identity=26.1603375527426, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=220, Percent_Identity=25.9090909090909, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 30002; Mature: 30002

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCINFNEFKLAKKSVKRNKCESNAEKFFSNAYYSSNIKDKIKFYTISIKLKPSFIDAYF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECHHHHHHHH
NRAELYKELEEYNKSIEDYNKILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMD
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
KHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDSRDSEAYENRALAYYNLKKYSPSIKD
HHHHHEEEECCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEHHHCCCCHHH
YTNALKLTPDNKNIYLNRGTVYYKIKNYENAISDYMKALDFKEKDPSFYHKIYTNCNDKL
HCCEEEECCCCCEEEEECCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHC
NKKIVPFVNLK
CCEECCEEECC
>Mature Secondary Structure
MDCINFNEFKLAKKSVKRNKCESNAEKFFSNAYYSSNIKDKIKFYTISIKLKPSFIDAYF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECHHHHHHHH
NRAELYKELEEYNKSIEDYNKILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMD
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
KHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDSRDSEAYENRALAYYNLKKYSPSIKD
HHHHHEEEECCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEHHHCCCCHHH
YTNALKLTPDNKNIYLNRGTVYYKIKNYENAISDYMKALDFKEKDPSFYHKIYTNCNDKL
HCCEEEECCCCCEEEEECCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHC
NKKIVPFVNLK
CCEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1368342; 8905231 [H]