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The map label for this gene is yomE [H]

Identifier: 153934834

GI number: 153934834

Start: 568098

End: 569102

Strand: Direct

Name: yomE [H]

Synonym: CLC_0558

Alternate gene names: 153934834

Gene position: 568098-569102 (Clockwise)

Preceding gene: 153937284

Following gene: 153935548

Centisome position: 15.11

GC content: 32.14

Gene sequence:

>1005_bases
ATGGAAAATAAAGAGAAAAAGTCGAAAAATAAGAAATTTTCTTTTAAAATATTTTTATATTTTATAATTTTTGAATTGTT
TTTTACAGCAGCCACAGCGCCTTTTATAATATTCCATGGTCCTTTTAAAAATGTTAAAAAGACTATGGTAGGAGCAGCTA
TGACTACTTTAAAACATCAATATATAGCTAAAACATTTTTATCAGATGCTAAAATAAAAGAGATATTAGGTGAAGATTCT
ATACAAACTATAAAACAAGATAAGAACTCTGTGTTAAAATTTGAAAACAAACATGATAGTACAATAGAAAGATATGATAT
AAGTTATGGTAAAAAGTTCAAAGGATATATGTTAGTAGTTCATGATCCATCTAGGGTAAAGGTTGGATATAGTTCTAAGT
TACCAGTACAAGGAGAACTTACAAGTCAGATAGCAAGAAATAAAAGAGCTGTTGCAGCTATTAATGCAGGTGGCTTTACA
GATAAATCAGCTAATAGCAAGTGGACAGGTACCGGTGGAAATGTTGAAGGGGTAATAATTAGTAAAGGTGAAGTTAAATA
TAATAGTAATAAGCAAGGAGAATTTACAGGAGATGTAGCAGCTATAACTAAAAAGGGGGCTTTAGTTGTAGGTAAACATA
GTATACAAGAATTAAAAGATTTAAATGTACAAGAAGCTATAACTTTTGGACCAGCCTTAGTAGTAAAGGGGCAAGGCACC
ATAACTTCTGGAGATGGCGGATGGGGAATGGCGCCTAGAACTGCTATTGGACAAAGAGAAGACGGAGCTATACTTATGCT
GGTTATAGATGGTAGACAAGCATCTAGTTTAGGAGCTACATTAAAAGATGTACAAGATATCATGTTACAATATGATGCAT
ATACTGCTACAAATTTAGACGGTGGATCTTCAACTACAATGTATCATGAAGGAGAAGTTATAAATAATCCTGCTAATTCT
TTAGGAGAAAGATCAGTACCATCTATTTTGTATGTTGAACCTTAG

Upstream 100 bases:

>100_bases
TAGGAAGTTTTACAATATTTCATAAAGCTTACTATTTAAAAAAATTTATATTTAGTGTACAATAATGAAAGATGTAAAAT
AAAGAGAAAGGAATTTTTAG

Downstream 100 bases:

>100_bases
GAGGAAAATATGAAAGTAGTAAAAAAAATAATATTATGGGTAATGATTTCATTAACATTACAATTTGCAGGATTGTTTTA
TATTGATAAATATTTTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MENKEKKSKNKKFSFKIFLYFIIFELFFTAATAPFIIFHGPFKNVKKTMVGAAMTTLKHQYIAKTFLSDAKIKEILGEDS
IQTIKQDKNSVLKFENKHDSTIERYDISYGKKFKGYMLVVHDPSRVKVGYSSKLPVQGELTSQIARNKRAVAAINAGGFT
DKSANSKWTGTGGNVEGVIISKGEVKYNSNKQGEFTGDVAAITKKGALVVGKHSIQELKDLNVQEAITFGPALVVKGQGT
ITSGDGGWGMAPRTAIGQREDGAILMLVIDGRQASSLGATLKDVQDIMLQYDAYTATNLDGGSSTTMYHEGEVINNPANS
LGERSVPSILYVEP

Sequences:

>Translated_334_residues
MENKEKKSKNKKFSFKIFLYFIIFELFFTAATAPFIIFHGPFKNVKKTMVGAAMTTLKHQYIAKTFLSDAKIKEILGEDS
IQTIKQDKNSVLKFENKHDSTIERYDISYGKKFKGYMLVVHDPSRVKVGYSSKLPVQGELTSQIARNKRAVAAINAGGFT
DKSANSKWTGTGGNVEGVIISKGEVKYNSNKQGEFTGDVAAITKKGALVVGKHSIQELKDLNVQEAITFGPALVVKGQGT
ITSGDGGWGMAPRTAIGQREDGAILMLVIDGRQASSLGATLKDVQDIMLQYDAYTATNLDGGSSTTMYHEGEVINNPANS
LGERSVPSILYVEP
>Mature_334_residues
MENKEKKSKNKKFSFKIFLYFIIFELFFTAATAPFIIFHGPFKNVKKTMVGAAMTTLKHQYIAKTFLSDAKIKEILGEDS
IQTIKQDKNSVLKFENKHDSTIERYDISYGKKFKGYMLVVHDPSRVKVGYSSKLPVQGELTSQIARNKRAVAAINAGGFT
DKSANSKWTGTGGNVEGVIISKGEVKYNSNKQGEFTGDVAAITKKGALVVGKHSIQELKDLNVQEAITFGPALVVKGQGT
ITSGDGGWGMAPRTAIGQREDGAILMLVIDGRQASSLGATLKDVQDIMLQYDAYTATNLDGGSSTTMYHEGEVINNPANS
LGERSVPSILYVEP

Specific function: Unknown

COG id: COG4632

COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018711
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF09992 DUF2233 [H]

EC number: NA

Molecular weight: Translated: 36424; Mature: 36424

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKEKKSKNKKFSFKIFLYFIIFELFFTAATAPFIIFHGPFKNVKKTMVGAAMTTLKHQ
CCCCHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
YIAKTFLSDAKIKEILGEDSIQTIKQDKNSVLKFENKHDSTIERYDISYGKKFKGYMLVV
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCCHHEEECCCCCCCCCEEEEE
HDPSRVKVGYSSKLPVQGELTSQIARNKRAVAAINAGGFTDKSANSKWTGTGGNVEGVII
ECCCEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCEECCCCCCEEEEEE
SKGEVKYNSNKQGEFTGDVAAITKKGALVVGKHSIQELKDLNVQEAITFGPALVVKGQGT
ECCEEEECCCCCCCCCCCHHEEECCCEEEEEHHHHHHHHHCCHHHHHCCCCEEEEECCCE
ITSGDGGWGMAPRTAIGQREDGAILMLVIDGRQASSLGATLKDVQDIMLQYDAYTATNLD
EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHCCEEECCCC
GGSSTTMYHEGEVINNPANSLGERSVPSILYVEP
CCCCCEEEECCCEECCCHHHCCCCCCCCEEEECC
>Mature Secondary Structure
MENKEKKSKNKKFSFKIFLYFIIFELFFTAATAPFIIFHGPFKNVKKTMVGAAMTTLKHQ
CCCCHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
YIAKTFLSDAKIKEILGEDSIQTIKQDKNSVLKFENKHDSTIERYDISYGKKFKGYMLVV
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCCHHEEECCCCCCCCCEEEEE
HDPSRVKVGYSSKLPVQGELTSQIARNKRAVAAINAGGFTDKSANSKWTGTGGNVEGVII
ECCCEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCEECCCCCCEEEEEE
SKGEVKYNSNKQGEFTGDVAAITKKGALVVGKHSIQELKDLNVQEAITFGPALVVKGQGT
ECCEEEECCCCCCCCCCCHHEEECCCEEEEEHHHHHHHHHCCHHHHHCCCCEEEEECCCE
ITSGDGGWGMAPRTAIGQREDGAILMLVIDGRQASSLGATLKDVQDIMLQYDAYTATNLD
EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHCCEEECCCC
GGSSTTMYHEGEVINNPANSLGERSVPSILYVEP
CCCCCEEEECCCEECCCHHHCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]