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The map label for this gene is yndF [H]

Identifier: 153934816

GI number: 153934816

Start: 155183

End: 156364

Strand: Direct

Name: yndF [H]

Synonym: CLC_0173

Alternate gene names: 153934816

Gene position: 155183-156364 (Clockwise)

Preceding gene: 153937566

Following gene: 153935571

Centisome position: 4.13

GC content: 26.4

Gene sequence:

>1182_bases
ATGAAATCAAAAAAGTGTTTAGCTATAATACTTATATTATCAACCATATGTATGACAGGATGTTGGGATAAGATAGAAAT
AAATGAAAGGGCATTTGCTTCTGTTCTCGGAGTGGATGCAGGAAAGGATATAGGTAAAGAAAAACAGCTAAAAGAAATAA
GTGAGTCAGCATCTTTTACAGGGAGTAAATTTGATAAAATAAAGGTAACCTATGCTTTCCCGGATATAAGTAAATTAGGC
CCTGAAAAGGGAGGAACAGCAGTAGATAATACTATGTCAGTAGATGCATATTCAATGCAGAATAGTATAAATGAAGTTAT
AAATAAAAGCAGTAGAACTTTAAGTTTTGGACACTTAAAGCTTATAGTTTTAAATACAAGTATTTTGGATTATAGTAATA
CTTTTAAAGAGGTAATAGATTATCTACAAAGACAACCAGCTATAAATAGAACGATTTATATAGTATTTTCAGAAGATAAA
AGTGAAGAAATACTTAAATTTAAGCCTAATATGGAAAAAAGTATAGAAAATTATATAATAGGTATATTAGAAAATAATAA
AAAAAGCAATACATCTTTCCCTCTTACATTAAATGAATTTTTAGAAAAGACTGGCCAAAATAATATAACTCTGATGCCCG
TTATTAATATAGATAAAGAAAATAAAGATCTTAAAATATCAAAAGTTGCTGTGATAAAAAATGATAAAATAAAGGGATAT
ATAAGTACGGAACAGGCTAATAGTATCCAACTTATTAATAAAAGATTTAAAGGAGGAACTAGAACAATAATAAGAGATGG
AAGTCCTTTAGATTATTCCATAGAAAATAATGAGAGAAAAATTAACATAAAGGATAAAAAGAAATTAAGTGTTGATATAA
AATTAAACTTAGAGGGTCAAATTAAAGGATATAATATTGATAAACAGATATCATCTAATGAAGAAAATATAAAAAAAATA
GAATCAAATTTAGATAAAGCCATAACACAGGATATAAAAGAAGTTATAAGAATATCTCAAACTGAATATAATACAGATAT
TTTAGATCTAGGAGAGTTCATACATAAGTATCACCCTAAACTGTGGAAAGAAATAAAAGGTGATTGGAATCAATTATATA
AAACTGTAGATATAAATGTTAGCGTGGATACAAAAGTTAGAAGAATAGGAGGAATAAAATAA

Upstream 100 bases:

>100_bases
ATAATTTTATTTTTAATAAGTAAATCTAAATTAAGTAAGAGGAAGCGATAATATTAAAAGTAAGTATAAGCATAAATATA
TATTTGGGAGTTGTTATATT

Downstream 100 bases:

>100_bases
TTTTTTCAAGTGAATATAACTATAATATTTGGCAATAATAACTAATAAATAAGATCAATAGGGGGAATATATATGAAAAA
AATATTAGTCTTTATGTTAA

Product: Ger(x)C family germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVLGVDAGKDIGKEKQLKEISESASFTGSKFDKIKVTYAFPDISKLG
PEKGGTAVDNTMSVDAYSMQNSINEVINKSSRTLSFGHLKLIVLNTSILDYSNTFKEVIDYLQRQPAINRTIYIVFSEDK
SEEILKFKPNMEKSIENYIIGILENNKKSNTSFPLTLNEFLEKTGQNNITLMPVINIDKENKDLKISKVAVIKNDKIKGY
ISTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKINIKDKKKLSVDIKLNLEGQIKGYNIDKQISSNEENIKKI
ESNLDKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPKLWKEIKGDWNQLYKTVDINVSVDTKVRRIGGIK

Sequences:

>Translated_393_residues
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVLGVDAGKDIGKEKQLKEISESASFTGSKFDKIKVTYAFPDISKLG
PEKGGTAVDNTMSVDAYSMQNSINEVINKSSRTLSFGHLKLIVLNTSILDYSNTFKEVIDYLQRQPAINRTIYIVFSEDK
SEEILKFKPNMEKSIENYIIGILENNKKSNTSFPLTLNEFLEKTGQNNITLMPVINIDKENKDLKISKVAVIKNDKIKGY
ISTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKINIKDKKKLSVDIKLNLEGQIKGYNIDKQISSNEENIKKI
ESNLDKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPKLWKEIKGDWNQLYKTVDINVSVDTKVRRIGGIK
>Mature_393_residues
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVLGVDAGKDIGKEKQLKEISESASFTGSKFDKIKVTYAFPDISKLG
PEKGGTAVDNTMSVDAYSMQNSINEVINKSSRTLSFGHLKLIVLNTSILDYSNTFKEVIDYLQRQPAINRTIYIVFSEDK
SEEILKFKPNMEKSIENYIIGILENNKKSNTSFPLTLNEFLEKTGQNNITLMPVINIDKENKDLKISKVAVIKNDKIKGY
ISTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKINIKDKKKLSVDIKLNLEGQIKGYNIDKQISSNEENIKKI
ESNLDKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPKLWKEIKGDWNQLYKTVDINVSVDTKVRRIGGIK

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 44648; Mature: 44648

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVLGVDAGKDIGKEKQLKEISESASFT
CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
GSKFDKIKVTYAFPDISKLGPEKGGTAVDNTMSVDAYSMQNSINEVINKSSRTLSFGHLK
CCCCEEEEEEEECCCHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEECCEE
LIVLNTSILDYSNTFKEVIDYLQRQPAINRTIYIVFSEDKSEEILKFKPNMEKSIENYII
EEEEEEEHHCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHEEE
GILENNKKSNTSFPLTLNEFLEKTGQNNITLMPVINIDKENKDLKISKVAVIKNDKIKGY
EEEECCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCEEEE
ISTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKINIKDKKKLSVDIKLNLEGQ
EECCCCCHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEEECCCCEEEEEEEEEEECE
IKGYNIDKQISSNEENIKKIESNLDKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPK
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHH
LWKEIKGDWNQLYKTVDINVSVDTKVRRIGGIK
HHHHHCCCHHHEEEEEEEEEEECHHHHHCCCCC
>Mature Secondary Structure
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVLGVDAGKDIGKEKQLKEISESASFT
CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
GSKFDKIKVTYAFPDISKLGPEKGGTAVDNTMSVDAYSMQNSINEVINKSSRTLSFGHLK
CCCCEEEEEEEECCCHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEECCEE
LIVLNTSILDYSNTFKEVIDYLQRQPAINRTIYIVFSEDKSEEILKFKPNMEKSIENYII
EEEEEEEHHCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHEEE
GILENNKKSNTSFPLTLNEFLEKTGQNNITLMPVINIDKENKDLKISKVAVIKNDKIKGY
EEEECCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCEEEE
ISTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKINIKDKKKLSVDIKLNLEGQ
EECCCCCHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEEECCCCEEEEEEEEEEECE
IKGYNIDKQISSNEENIKKIESNLDKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPK
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHH
LWKEIKGDWNQLYKTVDINVSVDTKVRRIGGIK
HHHHHCCCHHHEEEEEEEEEEECHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]