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The map label for this gene is botR

Identifier: 153934750

GI number: 153934750

Start: 877880

End: 878416

Strand: Direct

Name: botR

Synonym: CLC_0860

Alternate gene names: NA

Gene position: 877880-878416 (Clockwise)

Preceding gene: 153936033

Following gene: 153935962

Centisome position: 23.34

GC content: 19.93

Gene sequence:

>537_bases
ATGAATAAATTGTTTTTACAAATTAAAATGTTAAAAAATGACAATAGGGAGTTTCAAGAAATTTTTAAGCATTTTGAAAA
AACTATAAATATATTTACTAGAAAATATAATATATATGATAATTACAATGATATTTTGTACCATTTATGGTATACACTTA
AAAAAGTTGATTTGAGCAATTTCAATACACAAAATGATTTAGAGAGATATATTAGTAGGACTTTAAAAAGATATTGCTTA
GATATTTGCAATAAAAGAAAGATTGATAAGAAAATAATATATAATTCAGAAATTGTAGATAAGAAATTAAGCTTAATAGC
AAATAGTTATTCAAGTTATTTAGAATTTGAATTTAATGATTTAATATCCATATTACCTGATGATCAAAAGAAAATTATAT
ATATGAAATTTGTTGAAGATATTAAGGAGATAGATATAGCTAAAAAACTTAATATAAGTCGTCAATCTGTATATAAAAAT
AAAATAATGGCTTTAGAGAGATTAGAACCCATATTGAAAAAATTAATTAATATGTAG

Upstream 100 bases:

>100_bases
ATATTTCGTAAAAATGGCTTATTAAAAATTTAAAGGCAATTAGTTTATTTATAGTATAATAAAAAAATAATATGTATATT
ATGGAAGGGTAGTGGTAAAT

Downstream 100 bases:

>100_bases
TTTATATTTTTAAAAAATTTTAGGTTTACAAAAAATAGTGTGGCTATGTTATATATAAATGATAAGAATATACTGAAAAA
TGTATCCAAAATTTAAGGGG

Product: transcriptional regulator BotR, P-21

Products: NA

Alternate protein names: Transcriptional Regulator BotR; Transcriptional Activator TetR

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNKLFLQIKMLKNDNREFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSNFNTQNDLERYISRTLKRYCL
DICNKRKIDKKIIYNSEIVDKKLSLIANSYSSYLEFEFNDLISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKN
KIMALERLEPILKKLINM

Sequences:

>Translated_178_residues
MNKLFLQIKMLKNDNREFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSNFNTQNDLERYISRTLKRYCL
DICNKRKIDKKIIYNSEIVDKKLSLIANSYSSYLEFEFNDLISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKN
KIMALERLEPILKKLINM
>Mature_178_residues
MNKLFLQIKMLKNDNREFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSNFNTQNDLERYISRTLKRYCL
DICNKRKIDKKIIYNSEIVDKKLSLIANSYSSYLEFEFNDLISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKN
KIMALERLEPILKKLINM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21734; Mature: 21734

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLFLQIKMLKNDNREFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSN
CCCEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCC
FNTQNDLERYISRTLKRYCLDICNKRKIDKKIIYNSEIVDKKLSLIANSYSSYLEFEFND
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHEECHHH
LISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKNKIMALERLEPILKKLINM
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKLFLQIKMLKNDNREFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSN
CCCEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCC
FNTQNDLERYISRTLKRYCLDICNKRKIDKKIIYNSEIVDKKLSLIANSYSSYLEFEFND
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHEECHHH
LISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKNKIMALERLEPILKKLINM
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA