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The map label for this gene is rbcR [H]

Identifier: 153934668

GI number: 153934668

Start: 944560

End: 945447

Strand: Direct

Name: rbcR [H]

Synonym: CLC_0920

Alternate gene names: 153934668

Gene position: 944560-945447 (Clockwise)

Preceding gene: 153935974

Following gene: 153937394

Centisome position: 25.12

GC content: 29.62

Gene sequence:

>888_bases
ATGTATATTAATCTTGAACTTTACAGAATTTTTTATATTACTGCCAAATTAGGCAGTATATCTAAAGCAGCAAAAGAACT
TTTTACATCACAGCCAGCAGTTAGCCAATCTATAAAATTATTAGAGGGAAAATTAGGTGGGAAATTATTTCATAGAACTC
CAAGAGGAGTTTCACTTACCTTAGAAGGTGAGGTATTATTCAAATATATAGAGCAAGGCTATGGTCTTATGATGACAGCA
GAAAGAAAATTTTCGGAATTAAAAAATCTTAATTCAGGTCAGATAAGAATAGCTGTATGCAGTGCAGTATGCAAATACTA
TCTAATAAAATACATAGAAACTTATAATCTAAATTATCCACATATAAAAATTTATGTTAAGGATAAGTCAAGCTATGAAA
TAGCAAAAGCATTAGATTCAGGTGAGATAGATATAGGAATTTTAAATATGAATATAGACACAAGCAATTCTTTAAATATC
ATTAAAACATTTAAAATACAAGATTGCTTTGTGGTAGGAGAGAAGTACAAGGAAATTTGTGAAAAACAGATAACATTGAA
GGAGTTAGTGGATAAATATTCTATTATTCTACTAGAGAAAGGTGGCAATACAAGGGGGTATATAGATAATTATTTTAGTT
CACATGGGTTGGACATAATACCGCAAATAGAGTTAAGTAATGTAGAACTAATGATAGAATTTGCAAAAAGAGGCTTAGGA
GTTTCTTGTGTTATAAAAGATTATATCAAAAAGGAATTAGAGCAGAAACAATTATATGAAGTATCTATTAAAGAAAAAAT
CCCAGAGAGAATTATGGGCATAGCAACTAAAAAAGATATTCCTATGTCTACAGCAGCTGAGAGATTTATTGAGCTTATGG
GAGATTAG

Upstream 100 bases:

>100_bases
ATGCTTTTAATTGTTGAATAACTTTTATAAAGCAATTATAATTAATATAATGATATAAGTAAAATTAATATCTAGTATAG
GAGGTATACTAAATTTTTAT

Downstream 100 bases:

>100_bases
ATTATCTATTTGAATTTTATCTTTAGAATATGATATGCTAGTTTTTAATATTAATATAACTAAGATTAAAATTTAGCATT
GCTATTAAATTGTTTAAGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MYINLELYRIFYITAKLGSISKAAKELFTSQPAVSQSIKLLEGKLGGKLFHRTPRGVSLTLEGEVLFKYIEQGYGLMMTA
ERKFSELKNLNSGQIRIAVCSAVCKYYLIKYIETYNLNYPHIKIYVKDKSSYEIAKALDSGEIDIGILNMNIDTSNSLNI
IKTFKIQDCFVVGEKYKEICEKQITLKELVDKYSIILLEKGGNTRGYIDNYFSSHGLDIIPQIELSNVELMIEFAKRGLG
VSCVIKDYIKKELEQKQLYEVSIKEKIPERIMGIATKKDIPMSTAAERFIELMGD

Sequences:

>Translated_295_residues
MYINLELYRIFYITAKLGSISKAAKELFTSQPAVSQSIKLLEGKLGGKLFHRTPRGVSLTLEGEVLFKYIEQGYGLMMTA
ERKFSELKNLNSGQIRIAVCSAVCKYYLIKYIETYNLNYPHIKIYVKDKSSYEIAKALDSGEIDIGILNMNIDTSNSLNI
IKTFKIQDCFVVGEKYKEICEKQITLKELVDKYSIILLEKGGNTRGYIDNYFSSHGLDIIPQIELSNVELMIEFAKRGLG
VSCVIKDYIKKELEQKQLYEVSIKEKIPERIMGIATKKDIPMSTAAERFIELMGD
>Mature_295_residues
MYINLELYRIFYITAKLGSISKAAKELFTSQPAVSQSIKLLEGKLGGKLFHRTPRGVSLTLEGEVLFKYIEQGYGLMMTA
ERKFSELKNLNSGQIRIAVCSAVCKYYLIKYIETYNLNYPHIKIYVKDKSSYEIAKALDSGEIDIGILNMNIDTSNSLNI
IKTFKIQDCFVVGEKYKEICEKQITLKELVDKYSIILLEKGGNTRGYIDNYFSSHGLDIIPQIELSNVELMIEFAKRGLG
VSCVIKDYIKKELEQKQLYEVSIKEKIPERIMGIATKKDIPMSTAAERFIELMGD

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=28.2229965156794, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=28.135593220339, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=25.8620689655172, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788296, Length=238, Percent_Identity=27.7310924369748, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081904, Length=291, Percent_Identity=24.7422680412371, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=302, Percent_Identity=22.5165562913907, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787530, Length=229, Percent_Identity=23.1441048034935, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=25.6944444444444, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=139, Percent_Identity=28.7769784172662, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=137, Percent_Identity=31.3868613138686, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=23.6301369863014, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789204, Length=245, Percent_Identity=22.8571428571429, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=21.6606498194946, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=22.5806451612903, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787128, Length=143, Percent_Identity=27.972027972028, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33617; Mature: 33617

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYINLELYRIFYITAKLGSISKAAKELFTSQPAVSQSIKLLEGKLGGKLFHRTPRGVSLT
CEEEEEEEEEEEEEHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEE
LEGEVLFKYIEQGYGLMMTAERKFSELKNLNSGQIRIAVCSAVCKYYLIKYIETYNLNYP
ECHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC
HIKIYVKDKSSYEIAKALDSGEIDIGILNMNIDTSNSLNIIKTFKIQDCFVVGEKYKEIC
EEEEEEECCCCHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEECHHEEECHHHHHHH
EKQITLKELVDKYSIILLEKGGNTRGYIDNYFSSHGLDIIPQIELSNVELMIEFAKRGLG
HHCCHHHHHHCCEEEEEEECCCCCCCCHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCC
VSCVIKDYIKKELEQKQLYEVSIKEKIPERIMGIATKKDIPMSTAAERFIELMGD
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MYINLELYRIFYITAKLGSISKAAKELFTSQPAVSQSIKLLEGKLGGKLFHRTPRGVSLT
CEEEEEEEEEEEEEHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEE
LEGEVLFKYIEQGYGLMMTAERKFSELKNLNSGQIRIAVCSAVCKYYLIKYIETYNLNYP
ECHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC
HIKIYVKDKSSYEIAKALDSGEIDIGILNMNIDTSNSLNIIKTFKIQDCFVVGEKYKEIC
EEEEEEECCCCHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEECHHEEECHHHHHHH
EKQITLKELVDKYSIILLEKGGNTRGYIDNYFSSHGLDIIPQIELSNVELMIEFAKRGLG
HHCCHHHHHHCCEEEEEEECCCCCCCCHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCC
VSCVIKDYIKKELEQKQLYEVSIKEKIPERIMGIATKKDIPMSTAAERFIELMGD
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]