Click here to switch to the map view.

The map label for this gene is yisX [H]

Identifier: 153934483

GI number: 153934483

Start: 931489

End: 932142

Strand: Direct

Name: yisX [H]

Synonym: CLC_0905

Alternate gene names: 153934483

Gene position: 931489-932142 (Clockwise)

Preceding gene: 153935863

Following gene: 153936926

Centisome position: 24.77

GC content: 34.1

Gene sequence:

>654_bases
ATGAGTATCAGTAATCCACGAATTCCAGCGGATCTGATAATGGTAGACGATTTTTCATCATATGCGCAGGGATATTTATA
TGAGGAAATACCAATAACCCAGATAAAGATTTACGGAGAACATATTGAACATTTTGATTTTTCCAAAAGCGAAATCAATA
CAAGCATTTTCGAAAACTGTACATTCCTTGATTGCAGTTTTGAAGGAGCAAGCTTTGTTGACGTTGTGTTCCAAAATTGT
AATCTATCAAACAGTAATTTTACAGATGCATATTTTGAAAGATGCCAGTTTATTGCCTGTAAATGCGTAGGAGTGAATAT
GATCGATACTATTTTTAAGCAGACATCTATGCAAAGATCAAATTTTCAGTATTCCTATTTCGATAAAGCTAAAATGACAG
ATATTGCTTTTGAGGATATAGATTTTACTGAGGTATCTATAACTGAGGCCAAATTGAAGAGGTTCAAAGCAAAAAACTCC
CACTTCATTAAAAACAATTTTTTTAAGACAATGTTGACAGGTGTTGATTTTACAAAAAATGAGCTAGTTGCTCCGACGGT
ATCTTCACCTCCCATTGAATTTCAAGGAGCCAAAATTAGTATGGTTCAGGCGGCTGACTTAATTGGTATTTGGGGAATCA
TTGTTGATCAGTAA

Upstream 100 bases:

>100_bases
AGAAGAATGGGGCAATGAGAAAGTAAAGAGCAACAATGGATAAAATGCGAGGTGAGTATATTATTTACATAATTGCTATT
AAAAGGAAGGTAATAAAGCT

Downstream 100 bases:

>100_bases
TTAAATATAATTTTCATTAGGAAACTAATAGGTTATGAGCAAAGCATTTAATCGATATAATTGAACACAATAAATAAAAT
ATGTCTTATGTAGAATCAGG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSISNPRIPADLIMVDDFSSYAQGYLYEEIPITQIKIYGEHIEHFDFSKSEINTSIFENCTFLDCSFEGASFVDVVFQNC
NLSNSNFTDAYFERCQFIACKCVGVNMIDTIFKQTSMQRSNFQYSYFDKAKMTDIAFEDIDFTEVSITEAKLKRFKAKNS
HFIKNNFFKTMLTGVDFTKNELVAPTVSSPPIEFQGAKISMVQAADLIGIWGIIVDQ

Sequences:

>Translated_217_residues
MSISNPRIPADLIMVDDFSSYAQGYLYEEIPITQIKIYGEHIEHFDFSKSEINTSIFENCTFLDCSFEGASFVDVVFQNC
NLSNSNFTDAYFERCQFIACKCVGVNMIDTIFKQTSMQRSNFQYSYFDKAKMTDIAFEDIDFTEVSITEAKLKRFKAKNS
HFIKNNFFKTMLTGVDFTKNELVAPTVSSPPIEFQGAKISMVQAADLIGIWGIIVDQ
>Mature_216_residues
SISNPRIPADLIMVDDFSSYAQGYLYEEIPITQIKIYGEHIEHFDFSKSEINTSIFENCTFLDCSFEGASFVDVVFQNCN
LSNSNFTDAYFERCQFIACKCVGVNMIDTIFKQTSMQRSNFQYSYFDKAKMTDIAFEDIDFTEVSITEAKLKRFKAKNSH
FIKNNFFKTMLTGVDFTKNELVAPTVSSPPIEFQGAKISMVQAADLIGIWGIIVDQ

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646
- InterPro:   IPR012334 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 24751; Mature: 24620

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISNPRIPADLIMVDDFSSYAQGYLYEEIPITQIKIYGEHIEHFDFSKSEINTSIFENC
CCCCCCCCCEEEEEEECCHHHHCCEEEECCCEEEEEEEECHHHHCCCCHHHHCHHHHCCC
TFLDCSFEGASFVDVVFQNCNLSNSNFTDAYFERCQFIACKCVGVNMIDTIFKQTSMQRS
EEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHC
NFQYSYFDKAKMTDIAFEDIDFTEVSITEAKLKRFKAKNSHFIKNNFFKTMLTGVDFTKN
CCCEEEECCCCCCEEEECCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC
ELVAPTVSSPPIEFQGAKISMVQAADLIGIWGIIVDQ
CEECCCCCCCCCEECCCEEEEEHHHHHHEEEEEEECC
>Mature Secondary Structure 
SISNPRIPADLIMVDDFSSYAQGYLYEEIPITQIKIYGEHIEHFDFSKSEINTSIFENC
CCCCCCCCEEEEEEECCHHHHCCEEEECCCEEEEEEEECHHHHCCCCHHHHCHHHHCCC
TFLDCSFEGASFVDVVFQNCNLSNSNFTDAYFERCQFIACKCVGVNMIDTIFKQTSMQRS
EEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHC
NFQYSYFDKAKMTDIAFEDIDFTEVSITEAKLKRFKAKNSHFIKNNFFKTMLTGVDFTKN
CCCEEEECCCCCCEEEECCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC
ELVAPTVSSPPIEFQGAKISMVQAADLIGIWGIIVDQ
CEECCCCCCCCCEECCCEEEEEHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377 [H]